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Statistical Methods in Bioinformatics: An Introduction (Statistics for Biology and Health)


by Warren J. Ewens, Gregory Grant

List Price: $94.95
Price: $73.80
You Save: $21.15 (22%)
Available: Usually ships in 24 hours
Sales Rank: 363818
Studio: Springer
Binding: Hardcover
Number Of Pages: 588
Publication Date: September 30, 2005
Publisher: Springer


ACCESSORIES

Evolutionary Bioinformatics
by Donald R. Forsdyke

Introductory Statistics with R
by Peter Dalgaard

Fundamentals of Data Mining in Genomics and Proteomics
by Werner Dubitzky, Martin Granzow, Daniel P. Berrar



EDITORIAL REVIEWS

Product Description

Advances in computers and biotechnology have had a profound impact on biomedical research, and as a result complex data sets can now be generated to address extremely complex biological questions. Correspondingly, advances in the statistical methods necessary to analyze such data are following closely behind the advances in data generation methods. The statistical methods required by bioinformatics present many new and difficult problems for the research community.

This book provides an introduction to some of these new methods.  The main biological topics treated include sequence analysis, BLAST, microarray analysis, gene finding, and the analysis of evolutionary processes.  The main statistical techniques covered include hypothesis testing and estimation, Poisson processes, Markov models and Hidden Markov models, and multiple testing methods.

The second edition features new chapters on microarray analysis and on statistical inference, including a discussion of ANOVA, and discussions of the statistical theory of motifs and methods based on the hypergeometric distribution. Much material has been clarified and reorganized.

The book is written so as to appeal to biologists and computer scientists who wish to know more about the statistical methods of the field, as well as to trained statisticians who wish to become involved with bioinformatics. The earlier chapters introduce the concepts of probability and statistics at an elementary level, but with an emphasis on material relevant to later chapters and often not covered in standard introductory texts. Later chapters should be immediately accessible to the trained statistician. Sufficient mathematical background consists of introductory courses in calculus and linear algebra. The basic biological concepts that are used are explained, or can be understood from the context, and standard mathematical concepts are summarized in an Appendix. Problems are provided at the end of each chapter allowing the reader to develop aspects of the theory outlined in the main text.

Warren J. Ewens holds the Christopher H. Brown Distinguished Professorship at the University of Pennsylvania. He is the author of two books, Population Genetics and Mathematical Population Genetics. He is a senior editor of Annals of Human Genetics and has served on the editorial boards of Theoretical Population Biology, GENETICS, Proceedings of the Royal Society B and SIAM Journal in Mathematical Biology. He is a fellow of the Royal Society and the Australian Academy of Science.

Gregory R. Grant is a senior bioinformatics researcher in the University of Pennsylvania Computational Biology and Informatics Laboratory. He obtained his Ph.D. in number theory from the University of Maryland in 1995 and his Masters in Computer Science from the University of Pennsylvania in 1999.

Comments on the First Edition. "This book would be an ideal text for a postgraduate course…[and] is equally well suited to individual study…. I would recommend the book highly" (Biometrics). "Ewens and Grant have given us a very welcome introduction to what is behind those pretty [graphical user] interfaces" (Naturwissenschaften.). "The authors do an excellent job of presenting the essence of the material without getting bogged down in mathematical details" (Journal. American Staistical. Association). "The authors have restructured classical material to a great extent and the new organization of the different topics is one of the outstanding services of the book" (Metrika).



CUSTOMER REVIEWS (Average Customer Rating: 4.5 based on 3 reviews)

Digital library is not that usable - book itself is great  
USUALLY I am very positive in my responses. But this gibberish:

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COPYRIGHTED MATERIAL
Warren J. Ewens, Gregory Grant. Statistical Methods in Bioinformatics: An Introduction (Statistics for Biology and Health). (Springer, 2005). Page 231.

is what you get when you (pay for) the digital copy and want to use your (secret number of) copy privileges. Your print privileges - to print out the page - are limited as well and you do not know ahead of time what that limit is. It seems to be 0. Which should not be sold as a print privilege. The annotations come out in this same weird encoding and the "Report a Problem" link has been irritating me since I first tried April 17 when I purchased this article. I wanted to report that the text is dim and fuzzy, very difficult for reading online, so I filled out the "Report a problem" form. I spent time filling it out. The response was that "We know this doesn't work and we are working on it and try again later". That was April 17. Still happening. There is no place to rate the digital service.

I gave up and wrote regular Amazon customer service.
Amazon customer service refunded the price of the digital subscription.

May 07, 2008

Lots of material made accessible  
I'm a Statistics PhD student so you can condition on my prior to get at what's really going on with this book.

Bioinformatics is a departure from "regular" statistics and looks awfully messy at first pass. The sorts of assumptions one typically makes in other areas of statistical inference are patently false, so new techniques and intuitions have to be built up in order to attack these kinds of problems. This book does an excellent job of balancing the technical details with the necessary intuitions so one can really get a firm grasp on what's going on.

I wouldn't recommend this book to someone who hasn't done statistics at at least an advanced undergrad level (e.g., comfortable with Probability at the Ross-level and Statistical Inference at the Casella/Berger-level). But for people really interested in the material and coming from a solid statistical background the book is an excellent resource.

I would also strongly recommend it to teach out of.
October 10, 2007

Most Elegant Account of Bioinformatics  
I was impressed with the 1st edition of this book for its most comprehensive and elegant of statistical techniques in bioinformatics. The book is slightly below the level of the now classic M S Waterman (1995)book:Introduction to Computational Biology: Maps, Sequences and Genomes (Interdisciplinary Statistics). But this book is more update in some areas and has much more background materials on probability and statistics, which should provide a solid basis for understanding bioinformatics. Its pedagorical sense is unparalleled. It would make a very good choice for a stat/math oriented introduction to bioinformatics (as opposed to algorithimc/database oriented approach in cs).
November 26, 2004


SIMILAR PRODUCTS

An Introduction to Bioinformatics Algorithms (Computational Molecular Biology)
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Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
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Bioinformatics and Computational Biology Solutions Using R and Bioconductor (Statistics for Biology and Health)
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