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DOE JGI Releases Latest Version of IMG
June 01, 2005WALNUT CREEK, CA-An enhanced version of the Integrated Microbial Genomes (IMG) data management system has been released by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI). IMG 1.1 contains 32 new public genomes and 14 new genomes sequenced by DOE JGI, bringing the total of genomes in IMG to 337. These include 301 bacterial, 25 archaeal, and 11 eukaryotic genomes, of which 36 finished and 75 draft genomes were sequenced by DOE JGI.
The new IMG 1.1 features enhanced capabilities to improve the efficiency of the genome analysis process. To extend the utility of the organism and gene analysis tools, several new features have been added. These include a function to compare gene occurrence profiles across organisms, an enhanced support infrastructure for comparative organism statistics, and the ability to save and load organism and gene analysis settings from local user files. The documentation has also been expanded to ease the overall comprehensibility of IMG analysis.
IMG, accessible to the public at http://img.jgi.doe.gov/, is the result of a collaboration between the DOE JGI and the Lawrence Berkeley National Laboratory Biological Data Management and Technology Center (BDMTC).
The new version of IMG will be demonstrated on June 26, 2005 at the International Conference on Intelligent Systems for Molecular Biology in Detroit, Michigan (http://www.iscb.org/ismb2005/demos.html).
IMG continues to be updated on a quarterly basis with new public and DOE JGI genomes. The next update is scheduled for September 1st, 2005.
The DOE Joint Genome Institute, supported primarily by the Department of Energy Office of Biological and Environmental Research in the DOE Office of Science, is among the world leaders in whole-genome sequencing projects devoted to microbes and microbial communities, model system vertebrates, aquatic organisms, and plants. Established in 1997, JGI now unites the expertise of four national laboratories, Lawrence Berkeley, Lawrence Livermore, Los Alamos, and Oak Ridge, along with the Stanford Human Genome Center to advance the frontiers of genome sequencing and related biology.
U.S. Department of Energy (DOE) Joint Genome Insti
The new version of IMG will be demonstrated on June 26, 2005 at the International Conference on Intelligent Systems for Molecular Biology in Detroit, Michigan (http://www.iscb.org/ismb2005/demos.html).
IMG continues to be updated on a quarterly basis with new public and DOE JGI genomes. The next update is scheduled for September 1st, 2005.
The DOE Joint Genome Institute, supported primarily by the Department of Energy Office of Biological and Environmental Research in the DOE Office of Science, is among the world leaders in whole-genome sequencing projects devoted to microbes and microbial communities, model system vertebrates, aquatic organisms, and plants. Established in 1997, JGI now unites the expertise of four national laboratories, Lawrence Berkeley, Lawrence Livermore, Los Alamos, and Oak Ridge, along with the Stanford Human Genome Center to advance the frontiers of genome sequencing and related biology.
U.S. Department of Energy (DOE) Joint Genome Insti
Genome Current Events and Genome News RSSTime of day matters to thirsty trees, U of T researcher discovers
The time of day matters to forest trees dealing with drought, according to a new paper produced by a research team led by Professor Malcolm Campbell, University of Toronto Scarborough's vice-principal for research and colleagues in the department of cell and systems biology at the St. George campus.
Genetic analysis helps dissect molecular basis of cardiovascular disease
Using highly precise measurements of plasma lipoprotein concentrations determined by nuclear magnetic resonance spectroscopy (NMR), researchers led by Daniel Chasman at Brigham and Women's Hospital and Harvard Medical School in Boston, MA, the Framingham Heart Study in Framingham, and the PROCARDIS consortium in Stockholm, Sweden and Oxford, England performed genetic association analysis across the whole genome among 17,296 women of European ancestry from the Women's Genome Health Study.
Gene mismatch influences success of bone marrow transplants
A commonly inherited gene deletion can increase the likelihood of immune complications following bone marrow transplantation, an international team of researchers reports in the November 22 advance online issue of Nature Genetics.
Scientists at UA, collaborating institutions decode maize genome
Scientists from the University of Arizona led by Arizona Genomics Institute director Rod A. Wing and from collaborating institutions have deciphered the complete genetic code of the maize plant for the first time.
Ancestry attracts, but love is blind
People preferentially marry those with similar ancestry, but their decisions are not necessarily based on hair, eye or skin colour.
WPI Researchers Take Aim at Hard-to-Treat Fungal Infections
A team of researchers at the Worcester Polytechnic Institute (WPI) Life Sciences and Bioengineering Center at Gateway Park has developed a new model system to study fungal infections.
Technique finds gene regulatory sites without knowledge of regulators
A new statistical technique developed by researchers at the University of Illinois allows scientists to scan a genome for specific gene-regulatory regions without requiring prior knowledge of the relevant transcription factors.
Causative gene of a rare disorder discovered by sequencing only protein-coding regions of genome
For the first time, scientists have successfully used a method called exome sequencing to quickly discover a previously unknown gene responsible for a mendelian disorder.
New research into the mechanisms of gene regulation
A team led by Penn State's Ross Hardison, T. Ming Chu Professor of Biochemistry and Molecular Biology, has taken a large step toward unraveling how regulatory proteins control the production of gene products during development and growth.
Maize cell wall genes identified, giving boost to biofuel research
Purdue University scientists have helped identify and group the genes thought to be responsible for cell wall development in maize, an effort that expands their ability to discover ways to produce the biomass best suited for biofuels production.
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