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Profile of the Aging Kidney: PLoS Biology Press Release

November 23, 2004

A Global View of Gene Expression in the Aging Kidney

Four years ago in Science, Stuart Kim, a Stanford University developmental biologist, made the case for describing the broad strokes of a complex physiological process before defining its mechanisms. "A powerful, top-down, holistic approach," he wrote, "is to identify all of the components of a particular cellular process, so that one can define the global picture first and then use it as a framework to understand how the individual components of the process fit together." To get a broad view of gene expression in the developing nematode, Kim's lab turned to DNA microarray technology. In a new study, Kim and colleagues apply this same approach to the decidedly more complex problem of human aging and "present a molecular portrait" of the aging kidney.

Kidneys came from 74 patients, ranging in age from 27 to 92. Samples were extracted from donated kidneys or "meticulously harvested" from kidneys with localized disease to ensure only normal tissue was taken. Samples were obtained from two structures that are critical to kidney function: the renal cortex, which filters plasma, and the medulla, which alters urine composition to maintain fluid balance. Both deteriorate with age.

Kim and colleagues then used DNA microarrays to determine the activity of every gene in all the kidney samples. Of 33,000 known human genes on the microarray, 985 showed age-related changes.

Although cortex and medulla have different cell types and perform different functions, their genetic aging profile was very similar, suggesting a common aging mechanism operates in both structures. In fact, these mechanisms may function broadly, as most of the age-regulated kidney genes were also active in a wide range of human tissues. Other organisms appear to lack these changes, however, prompting the authors to argue that understanding aging in humans will require human subjects.

Most importantly, the genetic profile of the tissue samples correlated with the physiological decline of an aging kidney. An 81-year-old patient with an unusually healthy kidney had a molecular profile typical of someone much younger, while a 78-year-old with a less healthy kidney had the profile of a much older person. Using the power of functional genomics, this study has identified a set of genes that can serve as molecular markers for various stages of a deteriorating kidney. These gene sets can also serve as probes to shed light on the molecular pathways at work in the aging kidney, and possibly on the process of aging itself.

Citation: Kim S, Rodwell G, Sonu R, Zahn J, Lund J, et al. (2004) A Transcriptional Profile of Aging in the Human Kidney. PLoS Biol 2 (12): e427.

The published article will be accessible to your readers at: http://www.plosbiology.org/plosonline/?request=get-document&doi=10.1371/journal.pbio.0020427

Press-only preview of the article: http://www.plos.org/downloads/plbi-02-12-kim.pdf

Related image for press use: http://www.plos.org/downloads/plbi-02-12-kim.jpg
Caption for image: Genome-wide analysis of aging in the human kidney. Photo illustration by Rebecca Sonu and Emily Crane.


CONTACT:
Stuart Kim
Stanford University School of Medicine
Beckman Ctr. B300
Stanford, CA USA 94305
+1-650-725-7612
+1-650-725-7739 (fax)
kim@cmgm.stanford.edu


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THE FOLLOWING RESEARCH ARTICLES WILL ALSO BE PUBLISHED ONLINE:


Secreted Bacterial Effectors and Host- Produced Eiger/TNF Drive Death in a Salmonella-Infected Fruit Fly

A lethal infection of Drosophila is abrogated by removing a secreted Salmonella effector, demonstrating that the fly's immune system, which although initially protective, is subsequently harmful to the host.

Citation: Brandt S, Dionne M, Khush R, Pham L, Vigdal T, et al. (2004) Secreted Bacterial Effectors and Host- Produced Eiger/TNF Drive Death in a Salmonella-Infected Fruit Fly. PLoS Biol 2 (12): e418.

The published article will be accessible to your readers at:
http://www.plosbiology.org/plosonline/?request=get-document&doi=10.1371/journal.pbio.0020418

Press-only preview of the article: http://www.plos.org/downloads/plbi-02-12-schneider.pdf


CONTACT:
David Schneider
Stanford University
299 Campus Drive
Stanford, CA USA 94304-5124
+1-650-724-8063
+1-650-725-6757 (fax)
dschneider@stanford.edu


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Drosophila Spastin Regulates Synaptic Microtubule Networks and Is Required for Normal Motor Function

Kai Zinn and colleagues use loss- and gain-of function mutations to study the Drosophila homologue of a gene mutated in human autosomal dominant hereditary spastic paraplegia.

Citation: Sherwood N, Sun Q, Xue M, Zhang B, Zinn K (2004) Drosophila Spastin Regulates Synaptic Microtubule Networks and Is Required for Normal Motor Function. PLoS Biol 2 (12): e429.

The published article will be accessible to your readers at:
http://www.plosbiology.org/plosonline/?request=get-document&doi=10.1371/journal.pbio.0020429

Press-only preview of the article: http://www.plos.org/downloads/plbi-02-12-zinn.pdf


CONTACT:
Kai Zinn
California Institute of Technology
Broad Center, 114-96
1200 E. California Blvd.
Pasadena, CA USA 91125
+1-626-395-8315
zinnk@caltech.edu


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Modern Humans Did Not Admix with Neanderthals during Their Range Expansion into Europe

A model of human expansion into Europe reveals almost complete sterility between Neanderthal females and modern human males, implying that the two populations were probably distinct biological species.

Citation: Currat M, Excoffier L (2004) Modern Humans Did Not Admix with Neanderthals during Their Range Expansion into Europe. PLoS Biol 2 (12): e421.

The published article will be accessible to your readers at:
http://www.plosbiology.org/plosonline/?request=get-document&doi=10.1371/journal.pbio.0020421

Press-only preview of the article: http://www.plos.org/downloads/plbi-02-12-excoffier.pdf


CONTACT:
Laurent Excoffier
Zoological Institute
Baltzerstrasse 6
Bern, Switzerland 3012
+33-4-99-62-33-42
+33-4-99-62-33-45 (fax)
laurent.excoffier@zoo.unibe.ch


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Replication of Norovirus in Cell Culture Reveals a Tropism for Dendritic Cells and Macrophages

Noroviruses-which cause epidemic gastroenteritis-can now be grown in cells of the innate immune system, providing a tool to examine this pathogen while offering insights into norovirus biology.

Citation: Wobus C, Karst S, Thackray L, Chang K, Sosnovtsev S, et al. (2004) Replication of Norovirus in Cell Culture Reveals a Tropism for Dendritic Cells and Macrophages. PLoS Bio 2 (12): e432.

The published article will be accessible to your readers at:
http://www.plosbiology.org/plosonline/?request=get-document&doi=10.1371/journal.pbio.0020432

Press-only preview of the article: http://www.plos.org/downloads/plbi-02-12-virgin.pdf


CONTACT:
Herbert Virgin
Washington University School of Medicine
660 S. Euclid Ave
St. Louis, MO USA 63110
+1-314-362-9223
+1-314-362-4096 (fax)
virgin@immunology.wustl.edu


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In Silico Reconstitution of Listeria Propulsion Exhibits Nano-Saltation

A detailed computer simulation explicitly simulates monomer-scale biochemical and mechanical interactions to characterize bacterial motion.

Citation: Alberts J, Odell G (2004) In Silico Reconstitution of Listeria Propulsion Exhibits Nano-Saltation. PLoS Biol 2 (12): e412.

The published article will be accessible to your readers at:
http://www.plosbiology.org/plosonline/?request=get-document&doi=10.1371/journal.pbio.0020412

Press-only preview of the article: http://www.plos.org/downloads/plbi-02-12-alberts.pdf


CONTACT:
Jonathan Alberts
University of Washington
620 University Rd
Friday Harbor, WA USA 98250
+206-616-0895
+206-616-6804 (fax)
jalberts@u.washington.edu


*****************************

Patterns of Intron Gain and Loss in Fungi

A comparative study of four fungal genomes reveals the patterns of intron gain and loss over several hundred million years of evolution.

Citation: Nielsen C, Friedman B, Birren B, Burge C, Galagan J (2004) Patterns of Intron Gain and Loss in Fungi. PLoS Biol 2 (12): e422.

The published article will be accessible to your readers at:
http://www.plosbiology.org/plosonline/?request=get-document&doi=10.1371/journal.pbio.0020422

Press-only preview of the article: http://www.plos.org/downloads/plbi-02-12-galagan.pdf


CONTACT:
James Galagan
Broad Institute of MIT and Harvard
320 Charles Street
Cambridge, MA CA 02142
+1-617-258-0479
jgalag@mit.edu


Public Library Of Science



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