Profile of the Aging Kidney: PLoS Biology Press ReleaseNovember 23, 2004A Global View of Gene Expression in the Aging Kidney Four years ago in Science, Stuart Kim, a Stanford University developmental biologist, made the case for describing the broad strokes of a complex physiological process before defining its mechanisms. "A powerful, top-down, holistic approach," he wrote, "is to identify all of the components of a particular cellular process, so that one can define the global picture first and then use it as a framework to understand how the individual components of the process fit together." To get a broad view of gene expression in the developing nematode, Kim's lab turned to DNA microarray technology. In a new study, Kim and colleagues apply this same approach to the decidedly more complex problem of human aging and "present a molecular portrait" of the aging kidney. Kidneys came from 74 patients, ranging in age from 27 to 92. Samples were extracted from donated kidneys or "meticulously harvested" from kidneys with localized disease to ensure only normal tissue was taken. Samples were obtained from two structures that are critical to kidney function: the renal cortex, which filters plasma, and the medulla, which alters urine composition to maintain fluid balance. Both deteriorate with age. Kim and colleagues then used DNA microarrays to determine the activity of every gene in all the kidney samples. Of 33,000 known human genes on the microarray, 985 showed age-related changes. Although cortex and medulla have different cell types and perform different functions, their genetic aging profile was very similar, suggesting a common aging mechanism operates in both structures. In fact, these mechanisms may function broadly, as most of the age-regulated kidney genes were also active in a wide range of human tissues. Other organisms appear to lack these changes, however, prompting the authors to argue that understanding aging in humans will require human subjects. Most importantly, the genetic profile of the tissue samples correlated with the physiological decline of an aging kidney. An 81-year-old patient with an unusually healthy kidney had a molecular profile typical of someone much younger, while a 78-year-old with a less healthy kidney had the profile of a much older person. Using the power of functional genomics, this study has identified a set of genes that can serve as molecular markers for various stages of a deteriorating kidney. These gene sets can also serve as probes to shed light on the molecular pathways at work in the aging kidney, and possibly on the process of aging itself. Citation: Kim S, Rodwell G, Sonu R, Zahn J, Lund J, et al. (2004) A Transcriptional Profile of Aging in the Human Kidney. PLoS Biol 2 (12): e427. The published article will be accessible to your readers at: http://www.plosbiology.org/plosonline/?request=get-document&doi=10.1371/journal.pbio.0020427 Press-only preview of the article: http://www.plos.org/downloads/plbi-02-12-kim.pdf Related image for press use: http://www.plos.org/downloads/plbi-02-12-kim.jpg Caption for image: Genome-wide analysis of aging in the human kidney. Photo illustration by Rebecca Sonu and Emily Crane. CONTACT: Stuart Kim Stanford University School of Medicine Beckman Ctr. B300 Stanford, CA USA 94305 +1-650-725-7612 +1-650-725-7739 (fax) kim@cmgm.stanford.edu ***************************** THE FOLLOWING RESEARCH ARTICLES WILL ALSO BE PUBLISHED ONLINE: Secreted Bacterial Effectors and Host- Produced Eiger/TNF Drive Death in a Salmonella-Infected Fruit Fly A lethal infection of Drosophila is abrogated by removing a secreted Salmonella effector, demonstrating that the fly's immune system, which although initially protective, is subsequently harmful to the host. Citation: Brandt S, Dionne M, Khush R, Pham L, Vigdal T, et al. (2004) Secreted Bacterial Effectors and Host- Produced Eiger/TNF Drive Death in a Salmonella-Infected Fruit Fly. PLoS Biol 2 (12): e418. The published article will be accessible to your readers at: http://www.plosbiology.org/plosonline/?request=get-document&doi=10.1371/journal.pbio.0020418 Press-only preview of the article: http://www.plos.org/downloads/plbi-02-12-schneider.pdf CONTACT: David Schneider Stanford University 299 Campus Drive Stanford, CA USA 94304-5124 +1-650-724-8063 +1-650-725-6757 (fax) dschneider@stanford.edu ***************************** Drosophila Spastin Regulates Synaptic Microtubule Networks and Is Required for Normal Motor Function Kai Zinn and colleagues use loss- and gain-of function mutations to study the Drosophila homologue of a gene mutated in human autosomal dominant hereditary spastic paraplegia. Citation: Sherwood N, Sun Q, Xue M, Zhang B, Zinn K (2004) Drosophila Spastin Regulates Synaptic Microtubule Networks and Is Required for Normal Motor Function. PLoS Biol 2 (12): e429. The published article will be accessible to your readers at: http://www.plosbiology.org/plosonline/?request=get-document&doi=10.1371/journal.pbio.0020429 Press-only preview of the article: http://www.plos.org/downloads/plbi-02-12-zinn.pdf CONTACT: Kai Zinn California Institute of Technology Broad Center, 114-96 1200 E. California Blvd. Pasadena, CA USA 91125 +1-626-395-8315 zinnk@caltech.edu ***************************** Modern Humans Did Not Admix with Neanderthals during Their Range Expansion into Europe A model of human expansion into Europe reveals almost complete sterility between Neanderthal females and modern human males, implying that the two populations were probably distinct biological species. Citation: Currat M, Excoffier L (2004) Modern Humans Did Not Admix with Neanderthals during Their Range Expansion into Europe. PLoS Biol 2 (12): e421. The published article will be accessible to your readers at: http://www.plosbiology.org/plosonline/?request=get-document&doi=10.1371/journal.pbio.0020421 Press-only preview of the article: http://www.plos.org/downloads/plbi-02-12-excoffier.pdf CONTACT: Laurent Excoffier Zoological Institute Baltzerstrasse 6 Bern, Switzerland 3012 +33-4-99-62-33-42 +33-4-99-62-33-45 (fax) laurent.excoffier@zoo.unibe.ch ***************************** Replication of Norovirus in Cell Culture Reveals a Tropism for Dendritic Cells and Macrophages Noroviruses-which cause epidemic gastroenteritis-can now be grown in cells of the innate immune system, providing a tool to examine this pathogen while offering insights into norovirus biology. Citation: Wobus C, Karst S, Thackray L, Chang K, Sosnovtsev S, et al. (2004) Replication of Norovirus in Cell Culture Reveals a Tropism for Dendritic Cells and Macrophages. PLoS Bio 2 (12): e432. The published article will be accessible to your readers at: http://www.plosbiology.org/plosonline/?request=get-document&doi=10.1371/journal.pbio.0020432 Press-only preview of the article: http://www.plos.org/downloads/plbi-02-12-virgin.pdf CONTACT: Herbert Virgin Washington University School of Medicine 660 S. Euclid Ave St. Louis, MO USA 63110 +1-314-362-9223 +1-314-362-4096 (fax) virgin@immunology.wustl.edu ***************************** In Silico Reconstitution of Listeria Propulsion Exhibits Nano-Saltation A detailed computer simulation explicitly simulates monomer-scale biochemical and mechanical interactions to characterize bacterial motion. Citation: Alberts J, Odell G (2004) In Silico Reconstitution of Listeria Propulsion Exhibits Nano-Saltation. PLoS Biol 2 (12): e412. The published article will be accessible to your readers at: http://www.plosbiology.org/plosonline/?request=get-document&doi=10.1371/journal.pbio.0020412 Press-only preview of the article: http://www.plos.org/downloads/plbi-02-12-alberts.pdf CONTACT: Jonathan Alberts University of Washington 620 University Rd Friday Harbor, WA USA 98250 +206-616-0895 +206-616-6804 (fax) jalberts@u.washington.edu ***************************** Patterns of Intron Gain and Loss in Fungi A comparative study of four fungal genomes reveals the patterns of intron gain and loss over several hundred million years of evolution. Citation: Nielsen C, Friedman B, Birren B, Burge C, Galagan J (2004) Patterns of Intron Gain and Loss in Fungi. PLoS Biol 2 (12): e422. The published article will be accessible to your readers at: http://www.plosbiology.org/plosonline/?request=get-document&doi=10.1371/journal.pbio.0020422 Press-only preview of the article: http://www.plos.org/downloads/plbi-02-12-galagan.pdf CONTACT: James Galagan Broad Institute of MIT and Harvard 320 Charles Street Cambridge, MA CA 02142 +1-617-258-0479 jgalag@mit.edu Public Library Of Science | |||||||||||||||||||||
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Related Aging Current Events and Aging News Articles Children with cystic fibrosis not well covered by guidelines for vitamin D needs Existing recommendations for treating vitamin D deficiency in children with cystic fibrosis (CF) are too low to cover the serious need, leaving most at high risk for bone loss and rickets, according to researchers at Johns Hopkins Children's Center. 'Smile doctors' create, restore and enhance patients' smiles Imagine not having the ability to return the smile of a loved one or being too embarrassed by your mouth's appearance to display a smile. Waterborne disease risk upped in Great Lakes An anticipated increased incidence of climate-related extreme rainfall events in the Great Lakes region may raise the public health risk for the 40 million people who depend on the lakes for their drinking water, according to a new study. Circadian clock may be critical for remembering what you learn, Stanford researchers say The circadian rhythm that quietly pulses inside us all, guiding our daily cycle from sleep to wakefulness and back to sleep again, may be doing much more than just that simple metronomic task, according to Stanford researchers. Case Western Reserve University research finds drug candidate slows age-related macular degeneration Research results from the Case Western Reserve University School of Medicine show that the progression of age-related macular degeneration (AMD) is markedly slowed in new laboratory-engineered mice when they received treatments of retinylamine, a trial drug that has been tested in a medical school lab. Anti-cancer drug prevents, reverses cardiovascular damage in mouse model of premature aging disorder An experimental anti-cancer drug can prevent -- and even reverse -- potentially fatal cardiovascular damage in a mouse model of progeria, a rare genetic disorder that causes the most dramatic form of human premature aging, National Institutes of Health (NIH) researchers reported today. Emerging model organisms featured in CSH Protocols Biological research has long relied on a small number of model organisms, species chosen because they are amenable to laboratory research and suitable for the study of a range of biological problems. When cells go bad When a cell's chromosomes lose their ends, the cell usually kills itself to stem the genetic damage. But University of Utah biologists discovered how those cells can evade suicide and start down the path to cancer. New study proves that pain is not a symptom of arthritis, pain causes arthritis Pain is more than a symptom of osteoarthritis, it is an inherent and damaging part of the disease itself, according to a study published today in journal Arthritis and Rheumatism. Restless nights put older adults at risk for depression recurrence Nearly 60 percent of the nation's elderly have trouble sleeping, whether it's a lot of tossing and turning or outright bouts of insomnia. While for most people sleeplessness can be annoying at best or unhealthy at worst, for elderly individuals who have suffered from depression in the past, poor sleep may be the first sign that a new bout of depression is coming on. More Aging Current Events and Aging News Articles |
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