UCI-led study offers model to predict how microbiomes may respond to change

November 05, 2015

Irvine, Calif., Nov. 5, 2015 -- Scientists studying microbiomes have created a framework for predicting how the composition of these complex microbial communities may respond to changing conditions.

The review study, led by Jennifer Martiny, professor of ecology & evolutionary biology at the University of California, Irvine, appears in the Nov. 5 issue of Science. It presents a far-reaching assessment of microbiomes that could affect efforts to improve human health and the health of all the Earth's ecosystems.

Microbiomes are collections of microscopic organisms - such as bacteria, viruses, archaea, fungi, protozoa, algae and plankton - that inhabit ecosystems as varied as the human digestive tract, the ocean and soil. For instance, the 100 trillion microbes in the human gut - which vastly outnumber the "human" cells in our bodies - are critical to our health and development.

A few grams of soil or sediment may contain tens or even hundreds of thousands of microbial species, each interacting with the others. Together, they are largely responsible for the processing of nutrients and carbon in soil - regulating the decomposition of waste materials, the regeneration of soil fertility and greenhouse gas emissions.

The study delves into microbial evolutionary processes and explores previous research showing that microbial traits - particularly with bacteria - vary predictably in how they have evolved across the "tree of life." For example, some traits, such as photosynthesis, evolved a long time ago and are shared by large groups of genetically related bacteria. Other traits, such as sensitivity to a particular virus, have evolved many times in many small groups.

Martiny said that analysis of these earlier studies, along with her own work on soil microbial communities, suggested a way to forecast how changes in climate or diet, for instance, might affect ecosystems or the digestive tract. Patterns of microbiome diversity among samples can reveal more information than previously thought when paired with the evolutionary history of microbial traits. Microbiologists could use this information to narrow down the reasons for differences in microbiome diversity among many samples.

Recently, microbiome studies have sparked much public interest. Last week, leading scientists in the field called for the creation of a major federal initiative to better understand microbial communities involved with ecosystem and human health.

The planet hosts a vast variety of microbial communities, from those in undersea volcanos and plant ecosystems to untold numbers of microbes in the human body that fight disease. These microbiomes share many similar traits, and further research on them could reveal basic information about the Earth and its inhabitants.

Martiny added that her study offers just one pathway toward a more integrated grasp of microbiomes across all environments. "In addition to new technologies, we're in desperate need of new conceptual models to help us understand these complex communities," she said. "We already have a lot of data about microbiomes that could be put to further use."
-end-
Adam Martiny of UCI, Stuart Jones of the University of Notre Dame and Jay Lennon of Indiana University contributed to the work, which received support from the National Science Foundation, the U.S. Department of Energy and the U.S. Army Research Office.

About the University of California, Irvine: Currently celebrating its 50th anniversary, UCI is the youngest member of the prestigious Association of American Universities. The campus has produced three Nobel laureates and is known for its academic achievement, premier research, innovation and anteater mascot. Led by Chancellor Howard Gillman, UCI has more than 30,000 students and offers 192 degree programs. It's located in one of the world's safest and most economically vibrant communities and is Orange County's second-largest employer, contributing $4.8 billion annually to the local economy. For more on UCI, visit http://www.uci.edu.

Media access: Radio programs/stations may, for a fee, use an on-campus ISDN line to interview UC Irvine faculty and experts, subject to availability and university approval. For more UC Irvine news, visit news.uci.edu. Additional resources for journalists may be found at communications.uci.edu/for-journalists.

University of California - Irvine

Related Bacteria Articles from Brightsurf:

Siblings can also differ from one another in bacteria
A research team from the University of Tübingen and the German Center for Infection Research (DZIF) is investigating how pathogens influence the immune response of their host with genetic variation.

How bacteria fertilize soya
Soya and clover have their very own fertiliser factories in their roots, where bacteria manufacture ammonium, which is crucial for plant growth.

Bacteria might help other bacteria to tolerate antibiotics better
A new paper by the Dynamical Systems Biology lab at UPF shows that the response by bacteria to antibiotics may depend on other species of bacteria they live with, in such a way that some bacteria may make others more tolerant to antibiotics.

Two-faced bacteria
The gut microbiome, which is a collection of numerous beneficial bacteria species, is key to our overall well-being and good health.

Microcensus in bacteria
Bacillus subtilis can determine proportions of different groups within a mixed population.

Right beneath the skin we all have the same bacteria
In the dermis skin layer, the same bacteria are found across age and gender.

Bacteria must be 'stressed out' to divide
Bacterial cell division is controlled by both enzymatic activity and mechanical forces, which work together to control its timing and location, a new study from EPFL finds.

How bees live with bacteria
More than 90 percent of all bee species are not organized in colonies, but fight their way through life alone.

The bacteria building your baby
Australian researchers have laid to rest a longstanding controversy: is the womb sterile?

Hopping bacteria
Scientists have long known that key models of bacterial movement in real-world conditions are flawed.

Read More: Bacteria News and Bacteria Current Events
Brightsurf.com is a participant in the Amazon Services LLC Associates Program, an affiliate advertising program designed to provide a means for sites to earn advertising fees by advertising and linking to Amazon.com.