Genomes Current Events

Genomes Current Events, Genomes News Articles.
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Gene sequences reveal secrets of symbiosis
Genome sequences by KAUST of dinoflagellate algae indicate how they maintain their symbiotic relationship with corals. (2017-02-19)

DOE JGI upgrades its Microbial Genome Analysis System
Rising to accommodate the scientific community's interest in harnessing the potential of the microbial world, the US Department of Energy Joint Genome Institute (DOE JGI) has made Version 2.2 of the Integrated Microbial Genomes (IMG) data management system available to the public. (2007-06-20)

International consortium announces the 1000 Genomes Project
An international research consortium today announced the 1000 Genomes Project, an ambitious effort to sequence the genomes of at least 1,000 people to create the most detailed and medically useful catalogue to date of human genetic variation. (2008-01-22)

Machine learning generates realistic genomes for imaginary humans
Machines, thanks to novel algorithms and advances in computer technology, can now learn complex models and even generate high-quality synthetic data such as photo-realistic images or even resumes of imaginary humans. A study recently published in the international journal PLOS Genetics uses machine learning to mine existing biobanks and generate chunks of human genomes which do not belong to real humans but have the characteristics of real genomes. (2021-02-05)

Explosion in number of known life forms
A remarkable effort from University of Queensland researchers has helped increase the number of known genomes by almost 10 percent. UQ School of Chemistry and Molecular Biosciences ARC Future Fellow Professor Gene Tyson said researchers obtained 7,280 bacterial and 623 archaeal genomes (genetic materials from microorganisms) from environmental samples. (2017-09-11)

Ancient genomes shed light on divergence in human populations
Sequencing and analysis of ancient African genomes suggests that humans first began to diverge as a population between 350,000 and 260,000 years ago. (2017-09-28)

New insights into the late history of Neandertals
Researchers at the Max Planck Institute for Evolutionary Anthropology in Leipzig, Germany, have sequenced the genomes of five Neandertals that lived between 39,000 and 47,000 years ago. These late Neandertals are all more closely related to the Neandertals that contributed DNA to modern human ancestors than an older Neandertal from the Altai Mountains that was previously sequenced. Their genomes also provide evidence for a turnover in the Neandertal population towards the end of Neandertal history. (2018-03-21)

Teasing apart the effects of higher mutation load on fitness
As animals increasingly acquire interacting mutations that result in loss of gene function, the relative decline in their fitness may only be exacerbated, a new study in humans and fruit flies suggests. (2017-05-04)

DOE JGI releases IMG 2.0 with all genomes refreshed from RefSeq
Version 2.0 of the Integrated Microbial Genomes (IMG) data management system of the U.S. Department of Energy Joint Genome Institute has been released to the public. The content of IMG 2.0 has been entirely refreshed and extended with the latest versions of genomes available from the National Center for Biotechnology Information's (NCBI) Reference Sequence collection (RefSeq). (2006-12-01)

The late evolutionary event that gave rise to modern life
The emergence of oxygen-producing bacteria more than two billion years ago gave rise to life as we know it today, and now a new study reveals that this happening might have occurred multiple times. (2017-03-30)

DOE JGI releases fourth version of IMG in 2005
The fourth version of the Integrated Microbial Genomes (IMG) data management system of the DOE Joint Genome Institute (JGI) has been made available. The new version, IMG 1.3, contains 42 additional genomes sequenced by other institutions and 20 new genomes sequenced by JGI, bringing the total number of genomes in IMG to 674 (373 bacterial, 26 archeal, 15 eukaryotic, 260 viral), of which 44 are finished and 90 are draft genomes sequenced by JGI. (2005-12-01)

Zika arrived in Americas during mid-2013, following upsurge in air travelers
By sequencing a small number of Zika virus genomes from Brazil, researchers have estimated that the virus had a single entry into the Americas, likely more than a year before the virus was reported in Brazil. (2016-03-24)

New bird genomes give insight into evolution of genomic diversity
The Bird 10,000 Genome Project (B10K), an initiative to sequence the genomes of all living bird species, announces the completion of its second milestone--the release of genomes representing 92% of all bird families. (2020-11-12)

Latest Integrated Microbial Genomes data management system update release
Version 2.4 of the Integrated Microbial Genomes data management system, a resource provided to the scientific community for microbial genome data analysis, has now been released. Hosted by the US Department of Energy Joint Genome Institute, IMG has built a popular following as reflected in the overwhelming response to IMG workshops offered in Spring 2008, now full. DOE JGI has added a fall session, Sept. 15-19. (2007-12-05)

DOE JGI releases IMG 1.5 with curated archaeal genomes
Version 1.5 of the Integrated Microbial Genomes (IMG) data management system of the U.S. Department of Energy Joint Genome Institute (DOE JGI) has been released to the public. IMG 1.5 now contains a total of 741 genomes (435 bacterial, 32 archaeal, 15 eukaryotic genomes and 259 bacterial phages) of which 602 are finished and 139 are draft genomes. (2006-06-27)

Single cell division error may be responsible for complexity in cancer genomes
A single error in cell division related to the formation of a chromosome bridge can trigger a cascade of mutational events, rapidly generating many of the defining features of cancer genomes, a new study suggests. (2020-04-16)

DOE JGI releases latest version of IMG
An enhanced version of the Integrated Microbial Genomes (IMG) data management system has been released by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI). IMG 1.1, contains 32 new public genomes and 14 new genomes sequenced by DOE JGI, bringing the total of genomes in IMG to 337. These include 301 bacterial, 25 archaeal, and 11 eukaryotic genomes, of which 36 finished and 75 draft genomes were sequenced by DOE JGI. (2005-06-01)

Genome comparison of 12 fruit fly species
Researchers from the UAB Genomics, Bioinformatics and Evolution Group participated in an international research that has resulted in the completion of the genomes of 10 new fruit fly species. The study also includes new data on the evolution of the 12 currently known species during the past 60 million years. (2007-11-15)

Researchers uncover genetic mystery of infertility in fruit flies
Researchers have discovered a novel parasitic gene in fruit flies that is responsible for destroying the eggs in the ovaries of their daughters. (2019-12-17)

How domestication altered the genome of ancient horses
Analyses of 14 ancient horse genomes reveal the significant selective pressures domestication put on these animals, and highlight a relatively recent loss in their genetic diversity. (2017-04-27)

Gene deletions and duplications reveal our genetic storyline
By looking closely at DNA variation across a vast number of populations, researchers now have a better idea of how selection affects the human genome around the globe. (2015-08-06)

Northern California's COVID-19 epidemic resulted from multiple virus strains entering state
Distinct from virus transmission patterns identified elsewhere, analysis of SARS-CoV-2 genomes from a small number of California-based patients suggests the virus arrived in northern California through a complex series of introductions, not only from state to state but also from international travel. (2020-06-08)

New species from old data
Researchers have discovered three previously unknown species of a bacterium by scanning a publicly available data bank, reveals a study published today in the journal Genome Biology. The finding highlights the value of making unanalysed data from large-scale genome sequencing projects openly available online. (2005-02-21)

Study reveals how ancient viruses became genomic 'superspreaders'
Scientists have uncovered clues as to how our genomes became riddled with viruses. The study, supported by the Wellcome Trust, reveals important information about the so-called 'dark matter' of our genome. (2012-04-23)

Unexpected cross-species contamination in genome sequencing projects
As genome sequencing has gotten faster and cheaper, the pace of whole-genome sequencing has accelerated, dramatically increasing the number of genomes deposited in public archives. Although these genomes are a valuable resource, problems can arise when researchers misapply computational methods to assemble them, or accidentally introduce unnoticed contaminations during sequencing. (2014-11-18)

What to sequence next: Pick one species at a time
After humans, mice, chickens and others what genomes should scientists sequence next? In a paper published today in PLoS Genetics, Fabio Pardi and Nick Goldman of the EMBL-European Bioinformatics Institute present a way to decide. Surprisingly, they show that always choosing the next best single species is just as effective as planning to sequence several genomes in advance. (2005-12-02)

Mapping the gut microbiome to better understand its role in obesity
Several recent science studies have claimed that the gut microbiome -- the diverse array of bacteria that live in the stomach and intestines -- may be to blame for obesity. But Katherine Pollard, Ph.D., a senior investigator at the Gladstone Institutes, says it is not that simple. (2015-02-13)

The ancient history of Neandertals in Europe
Parts of the genomes of two ~120,000-year-old Neandertals from Germany and Belgium have been sequenced at the MPI for Evolutionary Anthropology. The analyses showed that the last Neandertals, who lived around 40,000 years ago, trace at least part of their ancestry back to these European Neandertals that lived around 80,000 years earlier. The 120,000-year-old Neandertal from Germany, however, carried some ancestry that may originate from an isolated Neandertal population or from relatives of modern humans. (2019-06-26)

New ancient genomes reveal a complex common history of dogs and humans
Newly sequenced whole genomes of ancient dogs reveal a complicated genetic legacy that reflects a long, shared history with humans spanning more than 11,000 years into the past. (2020-10-29)

Researchers predict infinite genomes
In a new study, TIGR scientists conclude that researchers might never fully describe some bacteria and viruses--because their genomes are infinite. (2005-09-22)

Research sheds light on genomic features that make plants good candidates for domestication
New research details how the process of domestication affected the genomes of corn and soybeans. The study looked at sections of crop genomes and compared them to the genomes of ancestor species. The results shed new light on what makes a species a good candidate for domestication. (2019-04-24)

Assembly of genetic sequences approaches 100 percent accuracy
Researchers have greatly improved upon a technique to assemble genetic sequences from scratch, reaching more than 99 percent accuracy in assembling the human genome in the correct order. (2017-03-23)

Bigger human genome pool uncovers rarer variants
Thanks to powerful computational tools developed at Simon Fraser University, more than 100 scientists from around the world have genetically mapped the largest and most varied number of human genomes to date. The researchers used computational tools to discover many variants in those genomes. Their findings have just been published in the Nature journal article An integrated map of genetic variation from 1,092 human genomes now online. (2012-11-01)

With genomes, bigger may really be better
Biologists analyzing DNA in search of the molecular underpinnings of life have consistently favored species with small genomes, which are cheaper to sequence and lack the repetitive (2009-03-03)

Swiss Institute of Bioinformatics 10th Anniversary Conference
It is our pleasure to welcome you to the SIB's 10th Anniversary celebration. (2008-09-12)

Bacterial relationships revealed
Rather than keeping their genes in the family, bacteria often exchange genetic material with totally unrelated species. That is why skeptics doubted that researchers could ever work out the evolutionary history of bacteria. But now, thanks to a new analytical approach that makes use of sequenced bacterial genomes, Nancy Moran and colleagues at the University of Arizona demonstrate that constructing a bacterial family tree is indeed possible. (2003-09-15)

A study by IRB Barcelona sheds light on the reasons behind genomes differences between species
A study led by LluĂ­s Ribas de Pouplana, researcher at the Institute for Research in Biomedicine gives an explanation for the divergent evolution of the genomes of different groups of species. The connection between the function of enzymes and the composition of the genomes shed light on the evolution and structure of genes, and explains differences between archaebacteria, bacteria and eukaryotes. (2012-03-29)

Noncoding DNA drives the convergent loss of flight in flightless birds
Tucked away in the noncoding regions of bird DNA, researchers have discovered molecular roots of the loss of flight seen in so many disparate paleognathous birds. (2019-04-04)

How do boxers differ from poodles? Researchers collar genomes
As any dog lover knows, no two breeds are identical. Some dogs are perfect for sloppy kisses. Others make fierce guardians. Still others resemble tiny, fluffy toys. Now, two new studies by scientists at The Institute for Genomic Research (TIGR) and collaborators reveal the genomic differences beneath such canine characteristics. (2005-12-07)

Whole-genome sequencing of African hunter-gatherers reveals human genetic diversity
Genome sequences of African hunter-gatherers from three different populations reveal insights into how humans have adapted to distinct environments over evolutionary history. By sequencing whole genomes of individuals within these groups, a team of scientists has substantially expanded knowledge about the scope of genetic diversity in humans, publishing their findings on July 26 in the journal Cell. (2012-07-26)

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