Articles tagged with Dna Sequences
A team of HSE researchers has created a comprehensive map of quadruplexes, unstable DNA structures involved in gene regulation. The study reveals that quadruplexes function in pairs, regulating tissue-specific genes in healthy tissues and cell growth and division in cancerous tissues.
A study led by SickKids scientists discovered a previously overlooked layer of genetic variation that could help explain individual differences in disease risk and treatment response. The researchers found that subtle changes in short tandem repeats can impact gene function, revealing new insights into neurodevelopmental conditions.
A study by The Hospital for Sick Children reveals a previously overlooked layer of genetic variation in short tandem repeats (STRs) that can influence gene regulation and shape disease risk. This discovery may inform future research and precision therapeutic development in support of Precision Child Health.
Researchers from the University of Florida discovered critical security vulnerabilities in portable genetic sequencers, exposing them to potential attacks and data breaches. The devices' reliance on insecure connections to laptops or unsecured networks amplifies these risks.
Researchers developed a new computational method, KMAP, to explore DNA sequence patterns and reveal regulatory element behavior. The study found an uncharacterized DNA motif linked to cancer biology and identified distinct repair pathways for CRISPR-Cas9 editing.
Thorny skates exhibit a unique size discrepancy, with small and large varieties coexisting along the North American coast. A new study reveals that COVID-19 restrictions led to an abundance of genetic data, allowing researchers to uncover the secret behind the size difference.
A breakthrough CRISPR-based test has been developed to diagnose Pneumocystis jirovecii pneumonia (PJP), a life-threatening fungal infection. The test detects RNA from live fungi in blood samples and throat swabs, providing a faster and more accurate diagnosis than current invasive bronchoscopy procedures.
Researchers have used CRISPR gene editing to study the regulation of the Unusual Floral Organs (UFO) gene in plants, uncovering the importance of conserved non-coding DNA sequences in controlling flower formation.
UTA research projects contributed $59 million to the national economy in 2024, supporting student development and collaboration with other research organizations. The university's research infrastructure, including cutting-edge equipment, helped drive economic impact in North Texas and beyond.
Researchers at Kyungpook National University have developed a new approach to map and engineer enzymes for enhanced plastic recycling. They employ landscape profiling to identify efficient biocatalysts for recycling polyethylene terephthalate (PET), producing high-purity monomers under mild conditions.
A joint research group clarifies a key mechanism of how retrotransposons preferentially insert in the centromere. The findings reveal strong integration biases for certain genetic elements, shedding light on rapid genome evolution.
The CRISPR tool was successfully used to correct a genetic defect in cells affected by chronic granulomatous disease. However, the repair process also introduced new genetic defects, highlighting the need for caution when using CRISPR technology in clinical settings.
Researchers at Colorado State University have identified an alternate method to study changes during the DNA replication process in lab settings using genetically modified yeast. This new approach provides a less toxic and quickly reversible alternative to hydroxyurea, allowing for better insight into cell cycle arrest mechanisms.
For the first time, researchers have demonstrated how mechanical forces affect gene expression by showing that RNAP polymerase remains on the DNA template and can be pulled to start a subsequent cycle of transcription. This force-directed recycling mechanism can change the relative abundance of adjacent genes.
A recent study published in Cell Reports reveals that a pregnant woman's genetic background significantly affects the effectiveness of Non-Invasive Prenatal Tests (NIPTs). The study found that a specific genetic variant in approximately 7% of women increases the odds of inconclusive results and impairs test sensitivity. This discovery ...
A novel network computer model, DiWANN, allows for efficient searches of cancer genetic data, identifying co-occurring mutations and similarities among DNA sequence elements across several types of cancer. The model provides a scalable solution to prioritize possible treatment targets.
Researchers at Gladstone Institutes have developed a streamlined way to engineer bacteriophages, viruses that naturally kill bacteria. The new technique uses retrons to edit phage genomes, allowing for the creation of numerous variants and paving the way for alternative treatments for antibiotic-resistant infections.
Researchers at HSE University discovered that the microRNA overexpression method may produce incorrect results due to errors in Dicer enzyme cleavage. This can lead to the formation of miRNA isoforms that target unintended genes, resulting in inaccurate conclusions about molecular mechanisms.
Scientists at deCODE genetics have discovered rare sequence variants in ITSN1 linked to Parkinson's Disease. These variants may contribute to disease pathogenesis through CDC42 dysregulation and dopaminergic neuron degeneration.
Researchers developed an AI model called GROVER that treats human DNA as a text, learning its rules and context to draw functional information about the DNA sequences. The tool has the potential to unlock the genetic code and advance personalized medicine.
The study demonstrates significant advancements in stability and functionality of ssDNA-SWCNT complexes, with high-affinity sequences showing superior binding strength. The findings also reveal notable improvements in resistance to enzymatic degradation, making these complexes suitable for long-term biological applications.
Researchers at Rice University discovered two types of motorized chain models: swimming motors and grappling motors, which manipulate chromosome structures. The study reveals how these proteins impact ideal polymer chains, leading to contraction or expansion depending on forces exerted.
DeepEvo uses deep learning and evolutionary biology to engineer proteins for desirable traits. The approach achieved a promising success rate of over 26% in engineering high-temperature tolerance in an enzyme, paving the way for efficient protein customization.
Scientists at IOCB Prague have developed two new types of catalytic DNA molecules that can reveal target molecule presence through fluorescence or color. The research uses directed evolution to discover novel fluorescent and colorimetric deoxyribozymes, with potential applications in diagnostic tests.
The special issue explores challenges and opportunities in managing synthetic genomics risks, introducing a common global baseline for nucleic acid synthesis screening. Review articles provide insights into enhancing gene synthesis security and biosecurity practices of synthetic DNA providers.
A team of researchers from Xi'an Jiaotong-Liverpool University has engineered a short sequence of artificial DNA to target the mutant protein p53-R175H, linked to lung, colorectal, and breast cancers. The new molecule, dp53m, inhibits cancer cell growth and increases sensitivity to chemotherapy agent cisplatin.
Researchers at Rice University have made a groundbreaking discovery about protein evolution, revealing that pseudogenes can provide clues to the evolutionary journey of proteins. The team found that certain mutations can stabilize the folding of pseudogenes, but also disrupt their biological functions.
A recent study published in Nature reveals a vast DNA tree of life for flowering plants, providing insights into their evolutionary history. The analysis of over 9,500 plant species reveals the rapid development of diversity in ancient times, with key findings supporting the plastid-based phylogenetic classification of angiosperms.
Researchers tested AlphaFold2's ability to predict protein structure changes from single point mutations. They found that AlphaFold can accurately predict deformation at the chromophore-binding site, leading to accurate predictions of fluorescence in fluorescent proteins.
Researchers identified genetic mutations in peas that enable high iron accumulation, opening doors for biofortification of staple crops like wheat and barley. This breakthrough has the potential to reduce iron deficiency anaemia globally.
Scientists at the University of Vienna successfully created fluorescent duplexes that can generate any of 16 million colors, surpassing the previous limit of 256 colors. This breakthrough allows for accurate reproduction of digital images on a miniature surface with 24-bit color depth.
A study published in PLOS ONE reveals that pre-Columbian Caribbean cultures consumed a wide variety of plants, including sweet potato, chili peppers, and domesticated tomatoes. The analysis also detected tobacco and cotton, challenging the traditional staple food narrative.
Researchers have developed STARVar, an artificial intelligence-powered method that leverages diverse data sources to identify genetic variants associated with diseases. The tool prioritizes genomic variants based on real-world patient symptoms, providing a more nuanced understanding of clinical presentations.
Researchers discovered a vast array of tardigrade species in Denmark, with unique DNA sequences detected in 96 samples, highlighting their adaptability to various environments. The findings shed light on the incredible survival abilities of these tiny creatures, which can withstand extreme conditions.
Researchers used AI to predict Z-DNA fragment locations that overlap with known mutations causing severe hereditary diseases. These fragments can influence traits and body processes, including hair color, height, weight, and cholesterol levels.
A team of scientists studied the impact of radiation on DNA, revealing that damaged areas are separated by a critical distance before breaking. The study found an exponential increase in DNA breakage time with distance, providing crucial information for effective DNA repair processes.
Researchers identified 12 rare genetic variants associated with QT interval prolongation, increasing the risk of severe heart rhythm abnormalities and sudden cardiac death. These variants can lead to a more precise clinical approach through improved identification and risk stratification, aligning with precision medicine principles.
Researchers at Leipzig University have developed a new method to visualize the activity of CRISPR-Cas protein complexes, allowing for precise observation of gene recognition. The study reveals that base pairing with RNA is not energetically advantageous, but becomes stable only after the entire sequence is recognized.
Researchers have developed a sustainable and scalable method to produce therapeutic oligonucleotides, which have the potential to treat various diseases. The new approach uses polymerases to amplify a catalytic DNA template in a single step, addressing challenges associated with current methods.
A new study reveals that previously unknown antibiotic resistance genes are widespread in bacteria across various environments, including the human microbiome. The findings suggest that these genes can pose a significant threat to human health, highlighting the need for enhanced understanding of their development and spread.
Researchers have developed a self-teaching web app called BRIDGEcereal that quickly and accurately analyzes genomic data for cereal crops, identifying patterns of DNA variations. This breakthrough tool is expected to revolutionize crop improvement by efficiently mining publicly accessible cereal pan-genomes.
Researchers from UTHSC have made a foundational discovery about chromosome biology through their work on the first-ever human pangenome reference. The draft pangenome uses complete genome assemblies to provide a diverse look at the genetic makeup of humans, shedding light on variation in parts of the genome that could not be seen before.
A study suggests that river erosion can drive biodiversity in geologically quiet environments, such as the Appalachian Mountains. The research found that changing landscapes pushed a species of fish into different tributaries, leading to distinct genetic lineages.
Researchers have identified a new human RNA ligase protein that plays a protective role against cellular stress and oxidative damage. The enzyme, C12orf29, links the ends of RNA strands in three characteristic steps and protects cells from menadione-induced oxidative stress.
Researchers found over 30,000 unknown viruses integrated into the DNA of single-celled eukaryotic organisms, including algae and human parasites. These 'virophages' may protect their hosts from giant virus infections by reprogramming them to build virophages.
Researchers from Swansea University and Université Grenoble Alpes demonstrate the effectiveness of selenium nanoparticles in killing ovarian cancer cell models. The study reveals a novel biological mechanism underlying the anti-cancer effect, involving histone methylatransferases and epigenetic processes.
Researchers have uncovered the ancient roots of a gene in wheat that provides resistance to the devastating Wheat Yellow Mosaic Virus, which causes significant economic losses. The discovery could lead to more resistant wheat cultivars, increased crop yields, and reduced use of harmful fungicides.
Gene therapy using CRISPR-Cas9 lipid nanoparticles has been shown to be highly effective in reducing target protein expression in mice. The new delivery system increases the efficiency of in vivo gene therapy, paving the way for safe and effective treatment.
Researchers identify duplicated gene as cause of social deficits and seizures in autism type, finding that reducing PRRT2 levels can restore normal brain activity and behavior. This discovery could lead to novel therapies for neurodevelopmental disorders with brain over-activation.
Researchers from Hiroshima Shudo University and the University of Tokyo have successfully identified species of deep-sea brittle stars using a novel metabarcoding approach. This method analyzes environmental DNA released from marine invertebrates, enabling efficient and cost-effective monitoring of biodiversity.
A new study by Institut Pasteur reveals that the 'bony-tongues' and 'eels' are genetically linked, shedding light on the evolutionary history of teleost fishes. The researchers sequenced genomes of several species and reconstructed relationships between different fish groups.
A study published in PLOS ONE found that common microbiome analysis techniques can yield erroneous results due to incomplete DNA databases. The researchers used computer simulations to test the consistency of current methods, showing that a large number of detected species are not actually present in the community.
A new study found that E. coli K-12 has accumulated numerous genetic changes compared to its original isolated bacteria, making it less suitable as a model organism. This discovery highlights the rapid evolution of bacterial genomes and challenges the long-standing use of a single strain in research.
Researchers at St. Jude Children's Research Hospital used a next-generation protein degradation technology to study CTCF, revealing its functional insights into transcription regulation. The AID2 system overcame limitations of previous approaches, identifying specific zinc finger domains responsible for CTCF-dependent transcription.
A new DNA biosensor developed by NIST, Brown University, and the French government-funded research institute CEA-Leti boasts accurate and inexpensive design. The modular device can measure biomarkers in a scalable and high-sensitivity manner.
Scientists have mapped and analyzed DNA methylation profiles in 580 different animal species, providing insights into the evolutionary conservation of epigenetic mechanisms. The study reveals that DNA methylation constitutes a cancer-protective mechanism in large animals with long lifespans, contradicting Peto's paradox.
Researchers have decoded the genetic composition of self-incompatibility in grasses, enabling new breeding strategies. The study found that two loci control self-incompatibility, allowing for more diverse populations to be bred.
G-Quadruplex DNA structures play a crucial role in regulating genes and cell processes, but their visualization is challenging due to the dynamic nature of double standard DNA. Fluorescence-active small molecule probes have emerged as a real-time visualization method, enabling researchers to detect G-quadruplexes with high selectivity.
Researchers modeled how genetic changes affecting protein synthesis speed can lead to misfolding and altered activity levels in proteins. This finding suggests the importance of kinetics alongside sequence for determining protein structure and function, with potential implications for fields such as biopharmaceutics and medicine.
The study found that the Erfurt Jewish community was more genetically diverse than modern-day Ashkenazi Jews, with at least two distinct groups. The research team discovered that the founder event, which makes all Ashkenazi Jews today descendants of a small population, happened before the 14th century.