Articles tagged with Noncoding Dna
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The study created a critical framework for understanding the architecture of the genome and its association with gene function in cells. The 4DN Consortium integrated data from over a dozen techniques to compile an extensive catalogue of looping interactions between genes and regulatory elements.
Researchers have identified DNA switches that control how brain cells called astrocytes work, which are known to play a role in Alzheimer's disease. The study used CRISPRi technology and single-cell RNA sequencing to test nearly 1000 potential switches, finding that about 150 of them controlled genes implicated in Alzheimer's disease.
Scientists studied Neanderthal DNA to understand how facial features develop and evolve. They found a region of DNA that activates the SOX9 gene, leading to a larger lower jaw in Neanderthals. This discovery sheds light on the genetic mechanisms behind face variation and evolution.
Researchers developed a chemical probe that binds to damaged mitochondrial DNA, blocking enzymatic processes that lead to its degradation. This approach lessens mtDNA loss, preserving energy production in vulnerable tissues. The new molecule successfully reduced inflammation and maintained functional DNA despite chemical tagging.
Cells employ a protein network to repress TE activity and keep themselves healthy. O-GlcNAc transferase (OGT) is a lead choreographer in this process, protecting cells from genomic instability by restraining TET activity.
A team of geneticists discovered a gene 'silencer' in junk DNA that prevents the devastating neurological disease autosomal dominant leukodystrophy (ADLD). The silencer element regulates lamin B1 expression, only affecting one type of cell, and its presence can spare patients from fatal symptoms.
Researchers discovered 47,350 active putative enhancers associated with Parkinson's disease, schizophrenia, and other neurological disorders. These enhancers were found to regulate gene expression during neuronal differentiation.
A UC Riverside-led team, funded by the NIH, aims to uncover molecular factors governing gene regulation and chromatin organization in P. falciparum. The project focuses on long non-coding RNAs, which play a crucial role in regulating gene expression and influencing disease progression.
Researchers at U of T have discovered that C2H2 zinc finger proteins, which primarily bind to DNA, also regulate RNA processing through various mechanisms. These proteins modify mRNA, controlling its length and altering it after transcription.
A new study by Flinders University experts has developed an AI-powered PCR system that improves the quality of DNA profiling and increases the efficiency of cycling conditions. This technology has the potential to revolutionize fields such as forensic science, clinical diagnostics, and environmental monitoring.
Researchers developed an AI model called GROVER that treats human DNA as a text, learning its rules and context to draw functional information about the DNA sequences. The tool has the potential to unlock the genetic code and advance personalized medicine.
Researchers have developed ENGRAM, a method that records cell signals and biological states as they occur inside living cells. This approach offers a novel way to capture biological information in living systems, potentially helping answer questions about cellular pasts and futures.
A new study has identified potential cancer drivers hidden in so-called 'junk' regions of DNA, which could lead to early diagnosis and new treatments. The discovery reveals mutations in previously overlooked regions of the genome that may contribute to the formation and progression of at least 12 different cancers.
A team of researchers from the University of Chicago has identified a genetic mutation in a non-coding region of DNA that alters thyroid hormone regulation, leading to a rare form of congenital thyroid abnormality. This discovery sheds light on a previously unexplained phenomenon and may lead to new treatments for individuals with this...
Scientists discovered a shift in gene regulation by enhancers during embryonic development, showing both 'instructive' and 'permissive' modes of regulation. The study found that developmental stage determines which mode is dominant, allowing for rapid gene expression changes and tissue-specific control systems.
A new technique employing a retrotransposon from birds may provide a safer alternative to CRISPR-Cas9 gene editing by inserting genes into a designated 'safe harbor' in the genome. This approach could complement CRISPR technology and enable efficient gene supplementation for hereditary diseases.
Researchers successfully combined seven synthetic chromosomes into a single yeast cell, resulting in a strain with more than 50% synthetic DNA. The team's achievement paves the way for engineering biology and understanding the fundamental principles of genome fundamentals.
Researchers at The Hospital for Sick Children identified high densities of variants linked to blood pressure genes in the non-coding genome. The study uses massively parallel reporter assay technology to examine genetic variants and provides a functional map of regulators of blood pressure genes.
Researchers found a molecular staple called NIHCOLE that helps liver cancer cells repair broken DNA, making them resistant to radiotherapy. Understanding this mechanism may lead to the development of new strategies to combat liver cancers with poor prognosis.
New research reveals how non-coding DNA accommodates a basic plan for butterfly wing patterns while allowing evolution of diverse patterns. Regulatory elements work like switches to turn up or down patterns, supporting an ancient color pattern ground plan.
Scientists have made a groundbreaking discovery about the role of 'junk' DNA in neurological disorders such as Motor Neurone Disease and Alzheimer's. The research found that breaks in this type of DNA can lead to oxidative genomic damage, which can accelerate aging and disease progression.
Researchers developed AI programs that accurately predicted DNA's regulatory elements and 3D structure, shedding light on genetic mutations' impact on diseases. The tools, named Sei and Orca, can sort noncoding DNA into sequence classes and predict how mutations affect gene activity.
Researchers used deactivated Cas9 proteins to target key segments of the human genome and synthetically trigger gene transcription. The study revealed that enhancers can send messages in both directions, but with a predominant regulatory mode where an enhancer tracks toward corresponding promoters.
Researchers at Massachusetts General Hospital have discovered that certain RNA molecules called tDRs released by cells in response to stress can serve as markers of cellular stress in different diseases. The study created an atlas of stress signatures for tDRs, which can be used to diagnose and understand various conditions.
A new mathematical framework has been created to study fitness landscapes of regulatory DNA, enabling the prediction of gene expression changes. The framework uses a neural network model trained on millions of experimental measurements to decipher the evolutionary past and future of non-coding sequences.
Scientists at Karolinska Institutet have developed a new high-precision tool to identify the function of noncoding DNA sequences, which may eventually contribute to the development of targeted drugs. The study reveals that these noncoding parts of patients' DNA are linked to genetic changes in diseases.
A new study has identified a transposon promoter that plays a crucial role in the development of mice and may also be essential for human viability. The discovery suggests that ancient viral DNA has been domesticated to regulate key biological processes, such as cell proliferation and embryo implantation.
Researchers found that viral fossils in Australian marsupials are used to make non-coding RNAs that protect against outside infection. The study suggests that these viral fossils may be helping to immunize animals, potentially providing a mechanism similar to vaccination.
A Z-RNA nanoswitch that switches from a right-handed A-RNA state to a left-handed Z-RNA state regulates immune responses against self RNAs. The switch is encoded by 'junk DNA' and protects normal cells from inflammatory diseases, while malfunctioning causes diseases like Aicardi-Goutieres disease.
Researchers at the University of Sheffield discovered a genetic risk factor for MND in non-coding DNA that can be targeted by SynCav1, potentially halting or preventing disease progression. The study built on patient data from Project MinE and could lead to personalized medicine for MND patients.
Researchers propose using repetitive DNA sequences, known as flipons, to create logic circuits and perform calculations. These sequences can form different DNA structures, enabling the creation of genetic programs that can be used to overcome environmental challenges.
Researchers discovered that a type of junk DNA in mosquitoes orchestrates the start of their life by regulating the activity of other RNA molecules. The breakdown of maternal RNA is essential for further development and is controlled by the stuttering DNA.
A new study found that genetic variations in non-coding regions of DNA can drive cancer development. Researchers analyzed over 6 million genetic variants and discovered correlations between specific SNPs and the expression of oncogenes and tumour suppressor genes.
Researchers at Baylor College of Medicine have discovered a functional link between noncoding DNA regions called Pitx2 enhancers and the expression of the Pitx2 gene in relation to atrial fibrillation. This interaction prevents predisposition to the condition by looping and folding distant Pitx2 enhancers to make contact with the gene.
Researchers analyzing a koala virus hope it can explain why humans have accumulated millions of years of 'junk' DNA. The retrovirus has infected germline cells in humans for over five million years, altering the host genetic code and that of its descendants.
Researchers found that satellite DNA, once thought to be 'junk,' is essential for holding the genome together and ensuring cell survival. This conserved function is critical for chromosomes to bundle correctly inside the nucleus.
Researchers found that new genes are more likely to appear in full form rather than gradually evolving through proto-genes. This is because non-coding DNA sequences give rise to highly ordered proteins, which are often deleterious to the organism.
A new software tool, CRISPETa, has been developed to efficiently delete non-coding DNA in living cells using CRISPR-Cas9 technology. This innovation has the potential to revolutionize our understanding of the genomic basis of disease and may lead to discovery of new disease-causing genes and potential new drugs.
A study published in Science has identified a key gene in the development of coeliac disease, found in 95% of non-coding DNA. The gene, 1nc13, regulates inflammatory response and its altered expression is associated with increased levels of pro-inflammatory genes.
Scientists at the Gladstone Institutes have invented a new way to read and interpret the human genome, using machine learning technology to predict gene-enhancer interactions. The TargetFinder tool accurately predicts complex three-dimensional interactions up to 85% of the time, opening the door to treating genetic diseases.
Researchers have found that snakes share similar genetic patterns with mammals and birds in their limbs and genitalia, suggesting a common ancestry. The study's findings suggest that these genetic elements may play a crucial role in phallus development and genital shape variation among species.
Researchers found a bacterium, Trichodesmium, with a unique genome that contradicts the understanding of free-living microbial genome architectures. The DNA sequence contains only about 63% expressed protein, breaking the mold for oligotrophs and challenging current knowledge.
Researchers found a genetic variant in noncoding DNA that leads to protein overproduction in heart cells, increasing the risk of sudden cardiac death by 40%. The discovery could lead to new drug treatments and improve understanding of cardiac repolarization.
Researchers identified highly conserved non-coding sequences in plant genomes, associated with basic biological processes like development and gene regulation. These findings suggest that non-coding DNA can have important functions beyond protein encoding.
A study by researchers at UC Davis found 248 new genes that exist only in Drosophila melanogaster, emerging from ancestrally non-coding DNA. These genes showed evidence of being under selection and were more likely to be larger and more complex.
Researchers at MIT have discovered a mechanism that allows cells to read their own DNA in the correct direction and prevents most of the so-called 'junk DNA' from copying into RNA. This process helps explain the existence of many recently discovered types of short strands of RNA whose function is unknown.
The Utricularia gibba genome, smallest sequenced from a complex plant, contradicts the notion that vast quantities of noncoding DNA are crucial for complex life. The bladderwort has purged most of its genetic material, including noncoding 'junk' DNA, while maintaining a functional set of genes similar to those of other plant species.
Researchers used information theory to identify DNA introns and exons, achieving an order of magnitude speedup over previous methods. This breakthrough can help better understand the human genome and predict diseases linked to DNA.
Researchers at Dartmouth's Geisel School of Medicine have identified variant enhancer loci (VELs) that can turn genes on or off in colorectal cancer. The discovery provides clues about the disease's development and could lead to new therapeutic targets.
The study found that humans have unique non-coding DNA segments missing in chimpanzees and other animals, which are correlated with specific human physical characteristics. These differences may have evolved to favor pair-bonding relationships and group living, rather than rapid copulation.
Seemingly redundant portions of the fruit fly genome contribute to normal development by ensuring genes are turned on and off at the appropriate times. The discovery sheds light on the potential importance of 'junk DNA' in understanding developmental disorders.
Researchers at the University of Edinburgh have identified a protein that enables sections of so-called junk DNA to be cut and pasted within genetic code. This finding could speed up the development of gene therapies by allowing scientists to control the process of DNA transposition.
Researchers found that unstable junk DNA helps tune gene activity, allowing organisms to rapidly adapt to changes. This discovery suggests that 'junk' DNA has a functional role in the evolution of our genome.
A recent study from the University of Iowa found that nearly half of human DNA, composed of repetitive sequences like Alu elements, gives rise to functional exons that regulate gene expression. These findings suggest a link between 'junk' DNA and human-specific traits, such as muscle-related diseases.
Researchers have discovered a novel mechanism in gene expression where non-coding RNAs create access to DNA, allowing transcriptional activation proteins to initiate gene expression. This process involves the transient synthesis of non-coding RNAs that unfurl tightly wound DNA, enabling gene expression.
Researchers at Yale University's Stem Cell Center discovered piRNAs, a recently identified class of tiny RNAs, play a crucial role in regulating gene function and stem cell fate. The study found over 13,000 piRNAs in fruit flies, revealing their importance in controlling chromatin and gene expression.
Researchers infer complete chromosome sequences from existing data using a statistical method that exploits genetic mutations in organisms with high variability. The study confirms the conserved function of junk DNA and its potential role in regulating gene function.
Scientists at UCSD School of Medicine have found that 'junk' DNA sequences may serve as punctuation marks to organize functional domains within the genome. This discovery could lead to breakthroughs in gene therapy by understanding how genomic material contributes to the regulation of genes.
Researchers uncover that junk DNA can generate microRNAs, regulating protein production, contradicting previous assumptions. The discovery expands our understanding of functional genomics and sheds light on the mysterious role of non-coding sequences in human development and disease.
Researchers found a new mechanism for gene evolution, with antifreeze fish using non-coding DNA to create a functional protein. This discovery challenges conventional thinking on gene origins and may provide insights into the emergence of new functions in living organisms.