Biodiversity observation and research rely more and more on biomolecular data.The standardization this data, encompassing both primary and contextual information (metadata), is crucial for enabling data (re-)use, integration, and knowledge generation. While both the biodiversity and the omics research communities have recognized the urgent need for (meta)data standards, they each have historically developed and adopted their own standards, making collaboration and data integration challenging.
To address the pressing need for interoperability between biodiversity and omics (meta)data standards, the Task Group (TG) for Sustainable DwC-MIxS Interoperability was formed. Its primary mission is to bridge the gap between the (meta)data standards of two distinct organizations, the Biodiversity Information Standards (TDWG)’s Darwin Core (DwC) standard and the Genomic Standards Consortium (GSC)’s Minimum Information about any (x) Sequence (MIxS) checklist, providing a sustainable framework for data integration.
The Task Group assembled a team of experts to build semantically precise and sustained interoperability between TDWG’s DwC standard, and the MIxS checklist from the GSC.
This collaborative effort culminated in a methods paper , in which they report on building sustainable interoperability between DwC and MIxS. The paper was published in the open-access, peer-reviewed Biodiversity Data Journal , as part of a special collection , supported by the EU-funded project BiCIKL (Biodiversity Community Integrated Knowledge Library), and looking to demonstrate the advantages and novel approaches in accessing and (re-)using linked biodiversity data.
“With representatives from established biodiversity data infrastructures, domain experts, data generators, and publishers, we - ab initio - bridged the conceptual to the application space,” write the task group members in their paper.
To ensure the sustainability and lasting impact of this initiative, TDWG and GSC have signed a Memorandum of Understanding on creating a continuous model to synchronize their standards.
“We trust that the activities of this TG will inspire similar activities between other metadata standards in this space, to break down silos and open a path to a more collaborative and interoperable future,” they say in conclusion.
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Original source:
Meyer R, Appeltans W, Duncan WD, Dimitrova M, Gan Y-M, Stjernegaard Jeppesen T, Mungall C, Paul DL, Provoost P, Robertson T, Schriml L, Suominen S, Walls R, Sweetlove M, Ung V, Van de Putte A, Wallis E, Wieczorek J, Buttigieg PL (2023) Aligning Standards Communities for Omics Biodiversity Data: Sustainable Darwin Core-MIxS Interoperability. Biodiversity Data Journal 11: e112420. https://doi.org/10.3897/BDJ.11.e112420
You can find all contributions published in the “Linking FAIR biodiversity data through publications: The BiCIKL approach” article collection in the open-access, peer-reviewed Biodiversity Data Journal on: https://doi.org/10.3897/bdj.coll.209 .
Biodiversity Data Journal
Aligning Standards Communities for Omics Biodiversity Data: Sustainable Darwin Core-MIxS Interoperability
3-Oct-2023