Articles tagged with Dna Assembly
Comprehensive exploration of living organisms, biological systems, and life processes across all scales from molecules to ecosystems. Encompasses cutting-edge research in biology, genetics, molecular biology, ecology, biochemistry, microbiology, botany, zoology, evolutionary biology, genomics, and biotechnology. Investigates cellular mechanisms, organism development, genetic inheritance, biodiversity conservation, metabolic processes, protein synthesis, DNA sequencing, CRISPR gene editing, stem cell research, and the fundamental principles governing all forms of life on Earth.
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The Hong Kong Bauhinia Genome Project has completed a decade-long effort to sequence the DNA of Hong Kong's floral emblem, revealing 28 complete chromosomes and solving the species' parentage. The project's T2T genome assembly provides insights into genetic mechanisms underlying its vibrant blooms and ecological adaptability.
Researchers demonstrated CycloneSEQ's ability to sequence complete bacterial genomes with long-read data and hybrid assembly methods. This work has improved our understanding of microbial functions by closing gaps in genomic assemblies, particularly for complex bacterial communities.
Researchers analyzed DNA from four generations of a large family to understand genetic mutations and their transmission. They found that the rate of de novo mutations varied by over twenty-fold depending on genome location.
The study reveals that centromeric R-loops play a critical role in ensuring chromosome alignment during oocyte meiotic divisions. Disruption of R-loop homeostasis leads to spindle assembly defects and chromosomal misalignment, highlighting the importance of R-loops in maintaining genomic stability.
The study provides a comprehensive reference for six ape species, including siamang, Sumatran orangutan, gorilla, bonobo, and chimpanzee. The ape genomes offer new insights into human and ape evolution, genetic differences among species, and potential therapeutic applications.
A new bacterial protein, BeeR, has been identified and its structure is being used to develop protein nanoparticles for targeted cancer drug delivery. The protein forms a hollow tube with a cavity capable of containing drug molecules.
University at Albany researchers have pioneered new methods for designing and assembling DNA nanostructures, enhancing their potential for real-world applications. They successfully assembled these structures without the need for extreme heat and controlled cooling, using unconventional buffer substances like nickel.
A team of University of Melbourne researchers has developed a novel drug delivery system composed of metal-biomolecule networks (MBNs), which eliminate the need for toxic drug carriers. The MBNs show antiviral, antibacterial, antifungal, anti-inflammatory and anti-cancer properties, potentially increasing success in drug development.
Researchers from Institute of Science Tokyo develop a new approach to produce four-stranded β-sheets with precisely controlled number of strands, overcoming challenges of fibril aggregation and isomeric variation. This breakthrough could advance biotechnology and nanotechnology applications.
A groundbreaking study has revealed insights into the evolution of flowering plants and their reproductive strategies. The Amborella trichopoda genome provides valuable information on the genetic underpinnings of plant diversity, shedding light on the mechanisms that determine plant sex.
The study reveals key genetic traits that could enhance disease resistance, climate adaptability, and crop yield in macadamia. Genome annotation also identified genes associated with fatty acid biosynthesis and antimicrobial properties conserved across species.
A new chromosome-scale reference genome of grass pea has been published, improving on earlier draft assemblies and offering potential for climate-smart agriculture. The updated genome allows for improved breeding and gene editing to develop varieties with improved agronomic characteristics or low toxin content.
The study of turtle genomes provides crucial information for the development of effective conservation strategies and the understanding of the evolution of sex chromosomes. Researchers have identified a novel three-dimensional chromatin conformation in both lineages, allowing for centromere-telomere interactions.
A team has assembled the genome and 3D chromosomal structures of a 52,000-year-old woolly mammoth for the first time. The preserved chromosomes revealed the mammoth's genomic organization and active genes in its skin tissue.
A team of scientists from Tohoku University and Kyoto University created a DNA-based molecular controller that enables swarm molecular robots to assemble and disassemble autonomously without external manipulation. This technology marks a significant step towards advanced autonomous molecular systems.
A team of UConn researchers, without lab experience, published the first chromosome-level genome of a desert hairy scorpion. The study sheds light on arachnid evolution and advances comparative genomics research.
A research team has successfully assembled a nearly gap-free, telomere-to-telomere genome of P. ussuriensis, filling gaps present in the P. trichocarpa genome. The assembly's high collinearity with P. trichocarpa facilitates comparative genomics, epigenetic research, and reproductive biology studies.
The new assembly toolkit PMAT addresses the limitations of traditional methods by utilizing highly accurate long-read HiFi sequencing data. It successfully assembled the mitogenomes of 13 plant species with minimal sequencing data, making it a cost-effective solution for large-scale genomic studies.
A research team has achieved a groundbreaking improvement in the haplotype-resolved genome sequence of japonica rice cultivar Nipponbare, revealing over 3,000 new genes. The enhanced genome assembly provides a robust framework for further rice genetic studies and breeding programs.
Scientists at Arizona State University develop a new simulation method to predict and guide the self-assembly process, creating tiny, self-assembled crystals with unique optical properties. This breakthrough advances technologies in computer science, materials science, medical diagnostics, and more.
Researchers have determined the molecular level function of free-forming structures in plant cells that help sense light and temperature, enabling plants to distinguish a range of different light intensities. The formation of these organelles is not random but is linked to specific locations within the cell, particularly near centromeres.
A new imaging technique developed by researchers at Washington University in St. Louis has allowed scientists to visualize the differences between synthetic peptides and amyloid beta fibril assemblies. The study provides valuable information on the heterogeneity of these assemblies, which is crucial for understanding protein toxicity a...
The University of Eastern Finland has published a chromosomally assembled reference genome for the European brown hare, consisting of 2.9 billion base pairs and 30,833 genes. This represents a significant breakthrough in genomic research for Finnish species.
The study confirms the presence of four distinct subgenomes in woody bamboos, with the C subgenome dominating two tetraploid lineages. The hexaploid lineage exhibits a dynamic shift in dominance from C to A subgenomes, contributing to evolutionary traits and forest habitat adaptation.
The sequencing of the blue whale and Etruscan shrew genomes has provided significant insights into developmental biology, with the largest mammal showing a surprisingly slow developmental clock. The study also sheds light on metabolism, with the tiny shrew serving as a model for understanding high-energy demands.
A new study suggests that East Asian hominins possessed advanced knapping abilities equivalent to Mode 2 technological features as early as 1.1 million years ago. The research team discovered organized flaking techniques and standardized operational processes, indicating complex mental templates among the toolmakers.
Scientists have deciphered the assembly process of flower-like nuclei in neutrophils, a type of white blood cell. This discovery enables potential therapeutic applications by guiding the development of new nuclear shapes to combat diseases.
Scientists develop novel synthetic strategy to create highly ordered colloidal crystals using DNA as the bonding element. The approach enables the synthesis of 10 new crystals with potential for designing metamaterials with unprecedented properties.
Researchers at USC Dornsife College of Letters, Arts and Science have invented a new technique called CReATiING that simplifies and cost-effectively constructs synthetic chromosomes. The method enables the creation of complex genetic modifications by combining natural DNA segments from yeast.
A team of researchers has developed a novel methodology to engineer colloidal quasicrystals using DNA-modified building blocks, revealing new avenues for nanoscale design. The study demonstrates the programmable nature of DNA to design and assemble quasicrystals deliberately.
Researchers improved biomass-related traits in sheepgrass using a custom genome editing system, revealing its potential for rapid genomic breeding. The study increased understanding of sheepgrass genomics and established a precedent for its genetic improvement.
A team of researchers has generated the first complete sequence of a human Y chromosome, uncovering important genomic features with implications for fertility. The new sequence reveals factors in sperm production and provides insights into medically relevant regions, such as the azoospermia factor region.
A research team sheds light on Dmc1 filament assembly mechanisms using single-molecule experiments. Swi5-Sfr1 and Hop2-Mnd1 proteins regulate Dmc1 assembly through distinct mechanisms, promoting efficient strand exchange during homologous recombination.
Griffith University researchers have developed a method to control the assembly of virus capsids using DNA origami templates. This technique allows for precise control over the shape, size, and topology of viruses, which could lead to breakthroughs in vaccine development and delivery systems.
Prof. LIANG Haojun's team proposed a new method to escape from metastability in self-assembly using DNA-functionalized nanoparticles. By introducing a 'catassembler' molecule, they corrected imperfect linkages and assisted the system to escape from metastability while preserving the assembled framework. This strategy has potential appl...
International researchers have identified nutrient-rich black rice varieties with improved agronomic traits, including shorter stem length and early maturity. These findings provide important resources for crop bioengineers to improve pigmented rice for human health and sustainable agriculture.
A new study found that neurons in a key brain region have different functions based on their genetic identity, which could lead to better understanding of the brain's computational flexibility and memory capacity. The diversity of neurons in the CA1 region of the hippocampus was previously unknown and is crucial for memory development.
The Human Pangenome Reference Consortium expands and updates the human genome project with nearly full genomic data from 47 people of diverse ancestry. Researchers at UW Medicine made significant contributions to drafting the pangenome reference and studying variation within repetitive DNA, which could improve equity in human genome re...
The human pangenome reference combines genetic material from 47 individuals, enabling a deeper and more accurate understanding of worldwide genomic diversity. This improves the detection of variants in the human genome, particularly structural variants that can have important health implications.
A recent study reveals the first high-quality nuclear genome sequence and assembly of Babesia duncani, a neglected species until now. The parasite's evolution and mechanism of virulence have been identified, providing leads for the development of effective therapies.
Researchers at Children's Hospital of Philadelphia discovered that viral proteins use phase separation to coordinate the complex process of replicating viral genomes and then encapsulating them in a viral particle. This process allows for the orderly and coordinated formation of infectious viral offspring.
Verkko software assembles gapless human genome sequences quickly and precisely, enabling better assessment of genomic diversity and comparative genomics. This innovation accelerates efforts to generate complete genome sequences of various species, improving research and discovery in the field.
Researchers have identified the genetic secrets behind skullcap's anti-cancer activity, enabling the production of synthetic compounds. The discovery is expected to lead to more sustainable and rapid synthesis of cancer-fighting molecules.
Hiroshima University researchers have generated a high-quality genome assembly of red perilla, allowing scientists to harness its abundance of potentially useful bioactive chemicals. The study enables targeted gene editing for enhanced phytochemical production, paving the way for new medical applications.
Researchers sequenced the genomes of two endangered sharks, finding low genetic diversity and signs of inbreeding in great hammerheads. In contrast, shortfin makos showed higher genetic diversity and limited inbreeding, offering a glimmer of hope for conservation efforts.
Researchers have made significant progress toward creating robots that can build nearly anything, including vehicles, buildings, and even bigger robots. The new system uses complex voxels that can carry power, data, and force, enabling the building of structures with intelligence.
Researchers at the University of Zurich have successfully decoded the genome of Aldabrachelys gigantea, one of the world's two remaining giant tortoise species. The reference genome provides crucial information for breeding programs in zoos to represent genetic diversity and conservation efforts across East Africa and Madagascar.
A team of physicists has created a new way to self-assemble particles using emulsions and foldamers. This breakthrough offers promise for building complex materials at the microscopic level, with potential applications in fields like materials science.
Researchers at University of Illinois at Urbana-Champaign have developed PlasmidMaker, an automated platform for designing and constructing plasmids. The platform uses Pyrococcus furiosus Argonaute-based artificial restriction enzymes to assemble DNA fragments with greater flexibility and precision.
Despite making progress, genome sequencing of 1.66 million animal species remains incomplete, with vertebrates accounting for 54% of current sequences. Invertebrates, including insects and spiders, comprise only 34% despite representing 78.5% of all species.
A team of physicists has discovered how DNA molecules self-organize into adhesive patches between particles in response to assembly instructions. This breakthrough enables the creation of materials with tailored structures and customizable properties.
A novel metagenome assembler called MetaPlatanus has been developed to improve DNA sequence accuracy, including those of uncultured organisms. The tool uses accurate short DNA sequence reads to assemble contigs and scaffold larger chromosome-scale structures.
A new method of DNA sequencing using PacBio HiFi sequencing has been successfully applied to assemble the genome of barley with high accuracy and speed. The approach yielded better quality genome sequences compared to other methods, including more complete genes and accurate reassembly of non-coding regions.
Scientists have introduced a universal pH-regulated assembly method for DNA nanostructures, using ethylenediamine to control self-directed cohesions. This method enables the formation of various geometries without specific base sequences, expanding dynamic DNA nanotechnology applications.
A team of scientists has developed a method to create structures with DNA building blocks, a millionth of a meter in size. They manipulated the sequencing of DNA to offer an intricate approach to synthesize materials at the most fundamental level.
Researchers at McGill University discover that cyanuric acid can coax DNA into forming a triple helix, unlike the familiar double helix. This breakthrough could lead to the creation of new DNA structures with unique properties.
Researchers at Brookhaven National Laboratory have discovered a new mechanism of self-assembly using DNA 'linker' strands, forming ladder-like ribbons with unique properties. This approach could lead to the fabrication of nanoscale materials with desired properties, such as plasmonic or fluorescent responses.
Researchers at NYU and Nanjing University have created a DNA-based assembly line that can efficiently produce novel materials on the nanoscale. The system uses three components: DNA origami, programmable cargo-donating devices, and a DNA walker, allowing for precise control over material creation.
This study sequenced and assembled nine BACs of giant panda, filling gaps in genomic knowledge and challenging the perception that it's a species at an evolutionary dead end. The data suggests that conservation strategies should focus on restoring wild habitats and maintaining regional genetic diversity.
Scientists at Brookhaven National Laboratory have developed a DNA-based assembly line for predictable, high-precision nano-construction, enabling the rapid assembly of new biosensors and solar cells. By controlling DNA interactions, they can regulate interparticle distances and assemble nano-objects into complex structures.