Articles tagged with Genomic Analysis
A new study has identified 74 previously unknown genomic regions that influence how people's bodies break down food into energy. These findings could help develop more personalized ways to maintain a healthy weight by taking into account an individual's genetic profile.
A team of evolutionary biologists and botanists found that the spoonweed genus, which emerged as a cold specialist during the Ice Age, repeatedly adapted to rapidly alternating cold and warm periods. The researchers identified physiological adaptations to drought and salt stress that helped the plants develop high tolerance to cold.
The MDI Biological Laboratory has been awarded a grant to promote cloud computing among researchers in Maine, aiming to level the playing field by providing access to sophisticated computing resources. The program will provide training on Google Cloud Platform and assist institutions in implementing cloud computing services.
Researchers at the University of Missouri have developed a free online resource that speeds up data analysis of human genomes three times faster than current methods. This enables scientists to see how an individual's genome makes them susceptible to different diseases in different ways, ultimately reducing associated costs and increas...
The study used multigene sequencing to identify genomic alterations in patients with metastatic breast cancer. Patients with genomic alterations ranked as ESCAT I/II saw improved progression-free survival with targeted therapies matched to their genomic changes, while those without these alterations did not benefit from the treatment.
Despite making progress, genome sequencing of 1.66 million animal species remains incomplete, with vertebrates accounting for 54% of current sequences. Invertebrates, including insects and spiders, comprise only 34% despite representing 78.5% of all species.
A new study led by scientists at Mount Sinai highlights the role of rare genomic differences in obsessive-compulsive disorder (OCD) risk. The research found that about 10% of the risk for OCD is attributed to rare genomic variations, which were not seen in previous studies.
A new computer program called Codetta can analyze the genome sequences of over 250,000 bacteria and archaea to identify alternative genetic codes. This could help scientists understand how genetic codes evolve and change.
Researchers analyzed the genome of 300 individuals from 15 Mexican ethnic groups to understand their evolutionary histories and adaptability to global changes. The study found that Native Mexican peoples have biological characteristics influenced by their complex history, including susceptibility to certain diseases.
Researchers have established that the Pontic-Caspian steppes and northern Caucasus are the center of horse domestication in Eurasia. The study reveals that domesticated horses spread throughout Asia at the same time as spoke-wheeled chariots and Indo-Iranian languages.
A new AI-powered algorithm, GEM, has been developed to quickly identify genetic causes of serious disease in newborns. The technology leverages machine learning and natural language processing to analyze vast amounts of genomic data and clinical records, achieving an accuracy rate of 92% compared to existing tools.
Researchers developed an integrated framework combining single-cell and metagenomics to characterize microbes. The approach showed higher accuracy and precise binning, revealing more bacterial genera and intra-species diversity.
A new algorithm developed by Carnegie Mellon University researchers offers a powerful tool for illustrating genome folding in cell nuclei. The Higashi algorithm analyzes chromatin interactions using single-cell Hi-C technology, revealing detailed variations in genome organization from cell to cell.
A new list of 546 expert-curated pathogenic variants in 84 genes has been developed for use in next-generation sequencing (NGS) genetic testing. This curated resource addresses the complexities of large assays and provides a scalable solution for test developers and laboratories.
Researchers analyzed fecal metagenomic DNA sequencing data to see if specific donor strains correlated with successful treatment outcomes. They found no correlation between donor strains and response to anti-PD-1 therapy in melanoma patients.
Camille Goblet is conducting genomic analysis to strengthen zoo management and save the critically endangered black rhinoceros from extinction. The project will aid in establishing pedigree and understanding species' adaptability to different environments, informing strategies to conserve the species.
A UCL-led research team has discovered a new gene causing hypertrophic cardiomyopathy, an inherited heart condition. The study found that variants in the ALPK3 gene are responsible for 1-2% of adults with the condition, affecting approximately 1,250-2,500 people in the UK.
A medieval Spanish individual, known as the 'Segorbe Giant,' has been analyzed using ancient DNA. The research found that he had a mix of North African and local Spanish ancestry, suggesting a complex history of migration and intermixing. This study sheds light on a dark event in medieval Spain's past.
Scientists prove Meselson effect in ancient asexual species, showing survival without sexual reproduction is possible. The study of beetle mite Oppiella nova reveals genetic variance and adaptation through independent genome evolution.
A study by University of Utah biologists discovered a mutation in the ROR2 gene is linked to short beak length in domestic pigeons. This mutation also underlies the human disorder Robinow syndrome, which shares striking facial features with the pigeon phenotype.
Researchers analyzed genome sequences and mobile phone data to track Covid-19 spread in Bangladesh. A three-day window between lockdown announcements and enforcement led to increased infections as citizens traveled to other areas.
Despite 10,000 years of inbreeding, the kākāpō genome sequencing reveals that the species has lost potentially deleterious mutations and now carries fewer harmful mutations than extinct mainland populations. This finding suggests that natural selection may have facilitated genetic purging in small populations.
Researchers have uncovered thousands of new regulatory regions that control disease-linked genes, providing a significant step forward for genomics-driven precision medicine. This new resource, available worldwide, could help identify markers revealing which patients will benefit most from specific treatments.
Researchers have helped fill gaps in the rhino evolutionary family tree by analyzing genomes of living and extinct species, finding that African and Eurasian lineages separated 16 million years ago and that low genetic diversity is a natural state for rhinoceroses, not a consequence of recent population declines
A team of scientists led by Assistant Professor Lae-Hyeon Cho identified a single mutation in the gene that codes for cytidine triphosphate synthase (CTPS), an enzyme crucial for early endosperm development. The study showed that overexpressing CTPS in genetically modified rice plants results in a larger endosperm, opening up opportuni...
Scientists have developed a new live analysis system for plant stomata, allowing for rapid and affordable identification of desirable traits. This innovation has the potential to accelerate crop development for climate-resistance, addressing future food shortages.
An international team found the genetic basis for the seadragon's lack of teeth, leaf-like appendages and sex-determination gene. The research also showed that males care for fertilized eggs until they hatch.
Researchers at Rice University are developing novel computational approaches to track environmental microbiome dynamics over time, across species and after perturbations. The team will use biofilm-based 'species abundance networks' on scaffolds to observe how they form their own genome-exchange networks.
A new study published in Genome Biology found that the ability of gut bacteria to produce spores is associated with their adaptation to humans. Bacteria that can produce spores have larger genomes and are less abundant in the gut, while those that cannot have smaller genomes and are more adapted to human hosts.
Researchers have developed a new integrative genetic test, LYNX, that analyzes standard and novel molecular markers in common lymphoid neoplasms. The test provides accurate detection of mutations, identification of large genome-wide chromosomal aberrations, and assessment of immunoglobulin and T-cell receptor gene rearrangements.
Researchers identified six novel molecular subtypes of thymic epithelial tumors that are independent of World Health Organization histologic type. The study used genomic information from The Cancer Genome Atlas dataset and the IU-TAB-1 cell line, and found no association between WHO histologic subtype and molecular subtypes.
A study of 18 bat species in Switzerland revealed 39 different viral families, with 16 infecting vertebrates and potentially posing a risk to humans. A near-complete genome of an MERS-CoV-related virus was also identified, highlighting the need for continued monitoring of viruses carried by bats.
A genetic analysis of the ancient massacre in Potočani, Croatia, reveals that 70% of the victims were unrelated, suggesting a large and stable local population. The results indicate that large-scale indiscriminate killing occurred in pre-state societies, challenging previous assumptions about the nature of violence in the past.
A genomic analysis of the first wave of COVID-19 in the UK revealed that over 1,000 viral sequences were introduced, with lineages originating from Spain, France, and Italy. The study suggests that earlier travel interventions could have reduced the epidemic's acceleration and intensity.
A genomic analysis of early SARS-CoV-2 outbreaks in Boston found that a small number of importations led to most cases, while superspreading events played a significant role in the spread of the virus. The study tracked the downstream effects of these events and highlights the importance of prevention and mitigation strategies.
The iGenomics app allows iPhone users to create a mobile genetics laboratory, enabling pandemic and ecology workers to study DNA on-the-go. The device can quickly map viral pathogen sequences and identify mutations for diagnosis and treatment.
Researchers sequenced and analyzed coral genomes, discovering genes that may help corals adapt to ocean warming. The study found that Acropora corals diversified when the world's oceans were warmer, suggesting they could handle temperature changes.
A case series of 192 SARS-CoV-2 positive patients in Southern California investigated transmission routes and local community spread within the Los Angeles metropolitan area. The study found that multiple transmission routes existed, including household, healthcare-associated, and travel-related cases.
A new mobile app, Genopo, developed by Garvan Institute of Medical Research, makes genomics more accessible to remote or under-resourced regions and the hospital bedside. The app enables fast, real-time genomic analysis on a smartphone, opening possibilities for point-of-care testing and unlocking information in DNA or RNA.
Researchers found sex differences in gene expression in almost every type of human tissue, with effects observed in genes related to disease and clinical phenotypes. Sex biases were discovered in genes relevant to drug metabolism and placental development.
A unique strain of Shiga-toxin E. coli (STEC) has been identified through genomic analysis, revealing its genetic makeup and potential for severe disease. The study's findings may contribute to the development of vaccines against emerging STEC pathogens.
New research sheds light on penguin evolution, revealing a pivotal role for climate change in their geographic expansion. Genetic analysis indicates that penguins originated along temperate coastlines before expanding into Antarctic regions.
A new ancestral lineage of tuberculosis has been found in East Africa, with genome analyses suggesting a unique origin. The discovery reinforces the hypothesis of an East African origin for the disease and provides insights into its evolution.
Researchers have developed a new method called redHUMAN to simplify genome-scale metabolic models for analyzing human metabolism. This approach reduces the complexity of human genome-scale models by focusing on specific parts of metabolism while minimizing information loss.
A new study analyzing ancient DNA from 93 early Caribbean islanders reveals at least three separate colonization events in the region. The findings provide genetic evidence of distinct population histories and interactions between the earliest settlers and newcomers from South America.
The analysis of ancient genomes has revealed how demographic events such as migrations have spurred major cultural shifts in France. The study found that Magdalenian-associated ancestry survived beyond the Iberian Peninsula, and that Neolithic people who migrated to France descended from Anatolian farmers.
Researchers analyzed genomic data of 20 lion specimens, including extinct cave lions from Siberia and India, finding a shared ancestor 500,000 years ago. The study suggests limited gene flow between modern lions' lineages after their divergence 70,000 years ago.
Researchers analyzed over 2700 C. elegans genomes to understand the causes of mutations. They found that DNA damage and inaccurate repair mechanisms can lead to mutations, which are a root cause of cancer. The study challenges the assumption of a single cause for mutational signatures in cancer genomes.
The evolution of pregnancy in seahorses and pipefishes is linked to modifications of the adaptive immune system. Genomic analysis reveals divergent genomic rearrangements in the MHC II pathway, which may help study immune deficiencies.
Researchers from IDIBELL and ICO conducted a pilot study to analyze intestinal microbiota genome in colon cancer patients. They used two sequencing methods, 16s and Shotgun, and found both techniques consistent, with complete sequencing more sensitive but not contradictory to single-gene sequencing.
Researchers analyzed 6,267 individuals to infer African group contributions to North-, South-American and Caribbean populations, finding enrichment of West-African ancestry in northern latitudes and South/East African ancestry in southern South-America.
The round goby's exceptional adaptability is attributed to its immune system, which features up to 30 times more inflammatory genes than comparable species. This enables the fish to deal with pathogens and extreme environmental conditions, facilitating its successful colonization of diverse waters around the world.
A global surveillance system for antimicrobial resistance can be established through genomic analysis of sewage, providing valuable information about the types of bacteria present in specific areas. This approach has great potential as a tool for monitoring diseases and managing outbreaks globally.
Butler simplifies genomic data analysis by constantly collecting health metrics and automating self-healing modules. This reduces large project execution times from years to months, improving researcher productivity and efficiency.
Researchers used the Pan-Cancer dataset to classify structural variations in cancer genomes and link them to mechanisms of formation. They identified complex processes that can lead to cancer genes becoming active, and developed methods to identify these variations.
Researchers have identified new genetic drivers of cancer in non-coding regions of the genome, finding that many cancers are driven by mutations in these areas. The study confirmed previously reported drivers and invalidated others, while also identifying novel putative driver rearrangements near genes called AKR1C.
KnowEnG, a Knowledge Engine for Genomics, guides researchers through complex genomic datasets by relating genes of interest to existing knowledge. The platform enables seamless analysis and interpretation, removing obstacles faced by biomedical researchers.
A global genetic comparison has discovered ten ancestral lineages in Asia, whereas northern Europe has a single ancestral lineage. The study provides a comprehensive genetic map for Asia, guiding scientists in studying diseases unique to Asians.
Researchers tracked genomic changes in hybrid orangethroat and rainbow darters, finding regions with genetic divergence contributing to reproductive incompatibility. These differences likely disrupt cell division and alter gene expression, driving the evolution of distinct traits.
A recent study reveals that parasitic flukes have a long evolutionary history, with genome comparisons showing significant adaptations to different hosts. The research team found that fasciolid flukes may have originated in ancient African elephants and later expanded into Eurasian herbivores.