Articles tagged with Microsatellites
A study on the phylogeography of Burmannia nepalensis, a rare mycoheterotrophic herb in subtropical China, found that historical climate fluctuations and geographic isolation shaped its evolutionary history. The research reveals limited gene flow due to mountain barriers and fragmented habitats.
The treatment demonstrated early signals of efficacy, with 65.7% of patients experiencing lasting stable disease, and was generally well-tolerated, with most adverse events being mild and manageable.
Scientists from South Africa and China successfully established the world's longest intercontinental ultra-secure quantum satellite link spanning 12,900 km. This achievement demonstrates South Africa's potential to develop a thriving quantum ecosystem.
Researchers discuss therapeutic opportunities for hypermutated urothelial carcinomas that are resistant to immunotherapy, including the potential of targeted therapies. High TMB is associated with defects in mismatch repair proteins and can lead to increased sensitivity to cancer treatments.
A recent study has uncovered new insights into the evolution of microsatellites in ancient and modern Adélie penguin genomes. The research found that microsatellite length remained remarkably stable over thousands of years, with some loci persisting for over half a billion years.
Researchers found that next-generation sequencing (NGS) identified more patients with microsatellite instability than immunohistochemistry (IHC), potentially leading to thousands of missed diagnoses and patients receiving incorrect treatment. NGS could guide the standard of care towards using this test method instead of IHC.
Researchers found XRCC1 to have both positive and negative correlations with prognosis across different tumors. The study also revealed associations between XRCC1 expression and DNA methylation patterns, TMB, MSI, immune cell infiltration levels, and immune checkpoint gene expression.
A recent study published in Nature Communications validates MSIntuit CRC, an AI-driven digital pathology diagnostic, as a reliable pre-screening tool for colorectal cancer. The diagnostic accurately rules out nearly 50% of MSS patients while correctly classifying over 96% of MSI patients.
Researchers at Ruhr University Bochum developed a new digital imaging method using artificial intelligence and infrared imaging to determine microsatellite status in colon cancer. This approach enables fast, label-free, and automated detection of the biomarker, which is crucial for personalized medicine.
A new method combines Centroidal Voronoi tessellation (CVT) and Model Predictive Control (MPC) to optimize microsatellite swarm trajectories, ensuring collision avoidance while minimizing fuel consumption. Numerical simulations validate the effectiveness of this macro-micro trajectory planning approach.
A recent study published in Science Advances reveals a correlation between genomic attributes and life history traits in Neoavian birds. The researchers found that generation time and body mass are associated with the length of orthologous microsatellites, transposable elements, and DNA deletions.
The microsatellite will fly at a Very Low Earth Orbit (VLEO), collecting data for commercial VLEO satellites with multiple applications. The satellite is designed to be sustainable, de-orbiting within days of its operational life.
Researchers have developed a simple, postal urine test that can detect signs of urothelial cancer in Lynch Syndrome (LS) patients, who are at high risk of developing tumors. The test uses cell-free DNA shed into the urine to identify DNA from tumor cells with characteristic microsatellite instability.
Researchers have developed 29 novel polymorphic microsatellite markers to accurately census endangered Sumatran rhinos. These markers are ideal for non-invasive wild sampling and can help determine genetic diversity, aiding conservation plans.
A DNA catalogue of Indian greater one-horned rhinoceroses has been created using dung samples, allowing researchers to identify unique individuals and track their populations. This forensic tool helps pinpoint poaching hotspots and trade routes, aiding conservation efforts.
A study by University of Tsukuba researchers found that patients with long stretches of repeat DNA sequences in the FLI1 gene are more likely to develop systemic sclerosis. The study suggests that these genetic variations may disrupt FLI1 expression, contributing to the disease's pathogenesis.
Researchers used infrared microscopes and artificial intelligence to classify tissue samples of colorectal cancer, achieving a sensitivity of 100% and specificity of 93%. The method allows for rapid diagnosis and can predict the course of the disease, enabling doctors to choose the appropriate therapy.
The assay has a clinically relevant 5-day turnaround time and can be conducted on as little as 20 ng genomic DNA. It requires minimum input of tumor DNA without the need for matched normal and is histology agnostic, addressing pre-analytical variability.
Researchers used next-generation sequencing to identify additional DNA markers in the carob tree, increasing resolution for population genetics studies. This approach shows promise for analyzing species with limited genetic diversity, including those that underwent strong bottlenecks.
A research team led by CU Denver scientists has developed reliable genetic markers for the whitebark pine, a tree considered for endangered status. These markers will aid in disease resistance screening, strategic seed collection, and climate change mitigation efforts.
Researchers characterized two classes of GGAA-microsatellites that interact with EWS/FLI binding sites, revealing unique regulatory mechanisms for cancer susceptibility and treatment
A new version of the CRISPR-Cas9 gene editing technique has been developed to correct molecular mistakes that lead to microsatellite repeat expansion diseases. The approach eliminated 95% or more of RNA foci linked to myotonic dystrophy and other diseases in laboratory models and patient-derived cells.
Scientists successfully demonstrated quantum communication between a satellite and a ground station, enabling the development of future satellite constellations. The technology uses lasers for high power efficiency and smaller terminals, facilitating the adoption of quantum key distribution for secure information transmission.
Researchers developed a resource of over 5 million microsatellites for use in various plant species, making genetic research cheaper and easier. The study also provides guidelines for researchers using microsatellites.
Researchers found that microsatellite instability sites are linked to cancer progression and survival, with some types of cancer experiencing distinct patterns of mutation across their microsatellites. This discovery opens opportunities for new treatments and therapies.
Researchers warn about the limitations of microsatellites in genetic diversity studies, highlighting the importance of sequencing flanking regions to minimize homoplasy. The study's findings suggest that using markers designed for a different species can lead to inaccurate conclusions.
A new study published in JNCI: Journal of the National Cancer Institute found that high marine ϖ-3 polyunsaturated fatty acid intake is associated with a lower risk of microsatellite instability (MSI)-high colorectal cancers. However, this relationship was not observed for MSI-stable (MSS) CRCs.
The CYGNSS mission will determine how a tropical cyclone forms and strengthen, improving hurricane forecasting and tracking. NASA has given a preliminary go-ahead to proceed with instrument development and launch of the hurricane-studying mission's eight microsatellites.
A new protocol developed by researchers at the University of Cincinnati significantly reduces the need for repetitive lab work in microsatellite-based research. By increasing the efficiency of primer testing and allowing for flexible experimentation, this method streamlines the development process, making it quicker and cheaper.
Researchers analyzed the genetic makeup of coelacanth offspring and found high overlap between mothers and their offspring, suggesting a single father. The study suggests that coelacanth females are monogamous, likely due to mating with a single male for successful fertilization.
A new mathematical model evaluates microsatellite genotyping reliability from degraded DNA templates, enabling reliable genetic information from non-invasive samples. The approach reduces false results and optimizes experimental protocols.
Researchers detected extensive microsatellite alterations in D3S1616, D5S346, D2S123, D3S1300 and D18S58 loci in the metaplasia-dysplasia-adenocarcinoma sequence of Barrett esophagus. These findings suggest that these markers may be useful for early detection of esophageal adenocarcinoma.
Researchers analyzed the genetic status of six Adi subgroups using microsatellite markers, finding low genetic differentiation among them. The study also reveals a closer relationship between the Adi tribe and neighboring Tibeto-Burman-speaking tribes in India.
A Penn State University research team investigated the simultaneous effects of numerous factors on microsatellite mutability, finding that repeat number, length, and composition are significant predictors. The study has applications in medical genetics, forensics, and conservation genetics.
Researchers found that longer junk DNA variations affected gene expression patterns in the brain of male prairie voles, leading to increased social behavior and parental care. The study's findings have implications for understanding human social diversity and personality traits.
A study by Emory University researchers has found that variations in microsatellite sequences of the vasopressin receptor gene can influence social behavior and parenting behaviors in voles. These findings suggest that junk DNA may play a role in shaping individual differences and social diversity.
The revised Bethesda guidelines effectively identify patients at risk for hereditary nonpolyposis colorectal cancer (HNPCC), also known as Lynch syndrome. A study of 1,222 patients found that these guidelines are the most effective way to detect MSH2 or MLH1 gene carriers.
Researchers at Stanford University challenge the existence of a single supercolony of Argentine ants spanning California. Instead, they propose that multiple genetically distinct colonies have colonized the state over the past century.
Research at Purdue University found that re-established elk herds in Pennsylvania and California have lost significant amounts of genetic diversity due to poor management and small reintroduction numbers. This loss can make them more vulnerable to environmental changes, highlighting the importance of effective herd management.
The USC consortium has received a $15 million NCI grant to determine the causes of colon cancer. The registry, which now consists of over 8,000 families, will focus on genetic factors, gene-environment interactions, and launching prevention trials.
Campbell and co-investigator John Gold aim to pinpoint geographic points of origin for toxic algae using hypervariable DNA markers. They hope to predict when and where red tides may occur along the Texas coast by analyzing genetic diversity within bloom populations.