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HKUST scientists discover how antibiotics target bacterial RNAP to inhibit its gene transcription

A research team at HKUST has discovered the mechanism of DNA melting and how an antibiotic called Myxopyronin inhibits this process. The study found that Myxopyronin binds to a partially closed form of the flexible clamp domain, diminishing the gate's ability to close and eventually inhibiting DNA melting.

SourceHong Kong University of Science and Technology·JournalProceedings of the National Academy of Sciences·DateMay 4, 2021

Deciphering the impacts of small RNA interactions in individual bacterial cells

Researchers deciphered the impacts of sRNA interactions on individual bacterial cells, revealing minor effects from base-pairing interactions and significant effects from disruptions in Hfq binding. The study used high-throughput sequencing and quantitative super-resolution imaging to understand the regulation of gene expression under ...

New technique reveals switches in RNA

Scientists have developed a method to visualize and quantify alternative structures of RNA molecules, identifying a conserved structural switch in the SARS-CoV-2 virus. This technique has implications for understanding viral replication and potential targets for antiviral therapy.

SourceUniversity of Groningen·JournalNature Methods·DateFeb 22, 2021

Binding sites for protein-making machinery

Researchers at ETH Zurich have developed a method to determine how tightly ribosomes bind to hundreds of thousands of RNA sequences in a single experiment, using machine learning and deep sequencing technology. This approach enables precise control over protein production in bacteria, with potential applications in genetic diseases.

SourceETH Zurich·JournalNature Communications·DateAug 27, 2020

Cold-sensitive staphylococci reveal a weakness

Researchers at Université de Genève discovered that the RNA helicase protein contributes to the synthesis of fatty acids, a crucial component of bacterial membranes. The findings provide insight into golden staph's ability to adapt to changing environments and may lead to new treatment options.

SourceUniversité de Genève·JournalPLOS Genetics·DateAug 3, 2020

Researchers map mechanisms in the largest CRISPR system

Researchers from the University of Copenhagen have mapped and analyzed the atomic structure of the Cmr-β complex, a type III-B CRISPR-Cas system. The study provides new insights into the mechanisms behind this complex's immune response against phages and its potential therapeutic applications in fighting antibiotic resistance.

RNA structures by the thousands

Researchers developed a high-throughput structure mapping method, Lead-Seq, to determine RNA structures in bacterial cells. The team successfully mapped the structures of thousands of RNAs simultaneously, including previously unknown 'RNA thermometers' that detect temperature changes.

SourceRuhr-University Bochum·JournalNucleic Acids Research·DateJun 17, 2020

How cells recognize uninvited guests

A research team at the University of Bonn has discovered that the TLR8 immune sensor plays a crucial role in defending human cells against bacteria and other pathogens. The enzymes RNaseT2 and RNase2 break down bacterial RNA into characteristic fragments, allowing TLR8 to recognize and respond to the invasion.

SourceUniversity of Bonn·JournalImmunity·DateApr 14, 2020

Newly found bacteria fights climate change, soil pollutants

Researchers at Cornell University have identified a new species of bacteria that can break down organic matter, including toxic chemicals released from burning coal, gas, and oil. The discovery could hold key to understanding the soil carbon cycle and predicting global climate change.

SourceCornell University·JournalINTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY·DateFeb 20, 2020

Cause of antibiotic resistance identified

Researchers at Newcastle University have confirmed that bacteria can lose their cell wall to avoid detection by antibiotics, leading to recurring urinary tract infections. The study found that L-form switching allows bacteria to survive and re-form their cell wall, making it harder for the immune system to target them.

SourceNewcastle University·JournalNature Communications·DateSep 26, 2019

Blue light for RNA control

Scientists at the Universities of Bayreuth and Bonn have found a way to regulate RNA molecule activity using blue light, enabling on/off control of gene expression. This breakthrough discovery is the basis for optoribogenetics, a new field of research.

SourceUniversity of Bonn·JournalNature Chemical Biology·DateAug 26, 2019

Entropy explains RNA diffusion rates in cells

Researchers have discovered exponential patterns in RNA diffusion rates within cells, displaying the highest possible degree of disorder or entropy. This pattern is linked to small-scale diffusive behaviors and can be compared to thermodynamic behaviors in larger systems.

SourceSpringer·JournalThe European Physical Journal B·DateAug 7, 2019

Structural and functional mechanisms of a new class of bacterial sigma/anti-sigma factors revealed

Researchers from the Chinese Academy of Sciences uncovered the structural and functional mechanism of SigI/RsgI factors, a new class of σ/anti-σ factors responsible for regulating cellulosomes in Clostridia and Bacilli. The study reveals a unique complex structure and critical recognition specificity among different pairs of proteins.

SourceChinese Academy of Sciences Headquarters·JournalNucleic Acids Research·DateMay 19, 2019

Copying made easy

Scientists have developed a new, inexpensive method called Cas9n-based amplification reaction that avoids thermal cycles and complicated instruments. The technique uses components from the bacterial immune system to recognize specific DNA sequences and introduce genetic scissors.

SourceWiley·JournalAngewandte Chemie International Edition·DateMar 12, 2019

How viruses outsmart their host cells

Scientists have deciphered the process by which viruses induce their hosts to transcribe viral genetic information, producing daughter viruses. The discovery sheds light on the 'viral exploitation' mechanism used by bacteriophages, such as lambda phage, and may contribute to the development of new antibacterial drugs.

SourceCharité - Universitätsmedizin Berlin·JournalMolecular Cell·DateMar 6, 2019

Cell editors correct genetic errors

Scientists have successfully transferred a key part of the plant's RNA editing mechanism into a bacterium, confirming a long-held theory about its functioning. This breakthrough improves our understanding of this widespread mechanism and opens up new avenues for research.

SourceUniversity of Bonn·JournalCommunications Biology·DateMar 1, 2019

Radiation-resistant E. coli evolved in the lab give view into DNA repair

Researchers created a lab-grown population of E. coli bacteria that became resistant to ionizing radiation through genetic mutations and enhanced DNA repair mechanisms. This breakthrough could lead to the development of radiation-resistant bacteria for environmental clean-up, cancer therapy protection, and astronaut protection in space.

SourceUniversity of Wisconsin-Madison·JournalJournal of Bacteriology·DateFeb 26, 2019