Articles tagged with Gene Expression
A new AI model, SpliceSelectNet, accurately predicts RNA splicing by capturing long-range DNA signals. The model's hierarchical Transformer architecture preserves high computational efficiency while maintaining single-nucleotide resolution, enabling accurate analysis of genomic regions.
Researchers developed a groundbreaking approach to prioritize schizophrenia-associated genes by analyzing genetic data from over 102,000 individuals. This study uncovered 641 previously unrecognized genes associated with schizophrenia, shedding light on the complex interactions between distant genetic variants.
Researchers from Kyushu University discovered that the circadian clock protein BMAL1 drives macrophages towards a pro-inflammatory M1 state by activating inflammatory signaling pathways. This mechanism links the body clock to intracellular metabolism and immune function, offering new insights into treating inflammatory diseases.
A new study has analyzed over 2100 samples to build a genetic dataset containing more than 500 million unique genes, revealing the immense potential of deep-sea biodiversity for developing new technologies. The research found that despite vast genetic diversity, deep-sea organisms rely on stable, core designs to survive extreme conditi...
Researchers at Texas Children's Hospital identified a set of dysfunctional genes and specific cell types that are vulnerable to genetic changes in female mice modeling Rett syndrome before symptoms appear. They found that even healthy cells with normal MECP2 gene had changes in gene activity due to neighboring defective cells.
Researchers have uncovered the structural basis of Argonaute assembly, revealing that chaperone proteins hold it in an open conformation allowing miRNA loading. The study also found that RNA plays a key role in guiding Argonaute folding.
Researchers discover that breast cancer cells exploit protective systems in bone marrow to remain dormant, using Notch2 signaling and genes like CXCR4 and TIE2. This dormancy allows cells to reactivate years later, leading to secondary tumors.
Researchers have discovered a previously underappreciated mechanism that helps immune cells respond rapidly to infections by altering RNA splicing. This study provides new insights into immune-mediated diseases such as rheumatoid arthritis and lupus, and may lead to more targeted therapies.
Researchers discovered that overproduction of a DNA repair protein creates DNA damage mimicking BRCA mutations, which may respond to targeted treatments. Tumors with high levels of EXO1 protein exhibit characteristics similar to BRCA-mutant cells, suggesting personalized therapies could be effective.
Research finds GADD45B induces MST1 expression by promoting DNA demethylation, exacerbating apoptosis and intestinal injury in I/R. GADD45B/TET1/MST1 axis may represent a viable therapeutic strategy for I/R injury.
Researchers at MIT discovered that gene circuits can reshape DNA folding and affect gene expression in human cells. The study found that rearranging genes along a DNA strand, or 'gene syntax,' can amplify or suppress the expression of neighboring genes.
Researchers identified stage-specific gene expression changes that occur during cellular senescence, revealing an early immune-activating response and a shift in cellular priorities. This study offers new insight into the molecular mechanisms of aging and highlights potential therapeutic strategies for delaying age-related decline.
Researchers developed RF-SIRF, a quantitative method to detect and map reversed DNA replication forks with single-cell resolution. The study identified unique epigenetic codes for DNA replication stress that can be further examined to understand genomic stability, aging, and treatment response.
Scientists discover that tRNA gene mutations can alter the reading of the genetic code, leading to increased protein synthesis errors. This phenomenon is linked to aging and cellular decline, with potential implications for neurodegenerative diseases like Alzheimer's.
A study mapped early molecular and cellular changes in the jaw joint that may trigger temporomandibular joint osteoarthritis. The research found structural and molecular changes in joint tissues, including inflammation, fibrosis, and metabolic shifts. Single-cell sequencing revealed diverse cell populations interacting within the synov...
A new study found that every type of epigenome protein produces a distinct pattern of gene expression, surpassing the on/off switch functionality. This discovery has significant implications for cellular engineering, enabling more dynamic control over cellular behavior and potential applications in biomanufacturing and bioproduction.
A custom-built AI system helped uncover how bacterial communities organize themselves, showing that early moments of a biological transition carry more information than previously considered. The findings bring new insight into the relationship between genotype and phenotype in Myxococcus xanthus.
Exposure to terahertz radiation induces significant changes in purine metabolism, pantothenate/CoA biosynthesis, and the pentose phosphate pathway. Gene network analysis reveals associations with membrane raft reorganization and receptor-mediated signaling involving epidermal growth factor receptor and G-protein subunits.
Researchers tracked genetic changes in Arabidopsis thaliana across 30 sites over five years, finding most populations adapted to local environmental conditions. However, some populations went extinct due to genetic drift, highlighting the importance of preserving biodiversity.
Researchers at Kyoto University identified DHX29 as a central regulator of codon-dependent gene expression. They found that DHX29 preferentially interacts with ribosomes decoding non-optimal codons and recruits a protein complex to selectively repress mRNAs enriched in these codons.
In a breakthrough study, researchers successfully integrated neuronal precursor cells into biobots, resulting in the formation of functional nervous systems. This development has significant implications for neuroscience, bioengineering, and regenerative medicine, enabling the investigation of fundamental questions about the origin of ...
Researchers investigated temperature-dependent sex determination in leopard geckos, finding that temperature influences sex development during a specific window of embryonic development. Early genetic changes, including the activation of male and female developmental pathways, occur before physical differences become apparent.
Scientists at St. Jude Children's Research Hospital developed BOUQUET to analyze 3D-enhancer architecture in machine learning-based graph theory framework, identifying protein condensates and predicting gene expression. The findings provide new insight into how cells regulate genes controlling specialized identities.
Salk Institute researchers identified Med14, a protein connected to GLP-1 drug effects on pancreatic beta cells, leading to improved viability, insulin production, and stress resistance. The study suggests a potential molecular link between GLP-1 drugs and broader benefits, including type 2 diabetes susceptibility genes.
Researchers created a cell-free system to study transcription drivers and revealed fundamental features of the transcription cycle in Mycobacterium tuberculosis. The method enabled precise design of therapeutics targeting key processes, which could help combat this pathogen.
Dr. Gregory Reeves' team has developed a method to measure the amount of Dorsal protein in the nucleus, revealing its interaction with DNA and providing a predictive model for therapeutic purposes. The study aims to control cellular processes and prevent diseases like cancer.
A gene therapy platform successfully mapped the living brain noninvasively, using engineered proteins to track gene expression in different brain regions. This technology has the potential to reveal critical information about cellular activity and neurological disease progression.
A team of scientists at the Indian Institute of Science discovered that disrupting a single gene alters serotonin signaling, leading to swarming behavior in worms. The study suggests that neuromodulatory control of social behavior might be evolutionarily conserved across species.
Researchers identify nonsense-mediated mRNA decay (NMD) as a central mediator of neuronal migration and cortical lamination. The study reveals that UPF2, a core component of NMD machinery, is essential for proper neuron migration and brain development.
The development of spatial transcriptomics has advanced gene expression understanding, but selecting suitable analytical approaches is challenging. A database curated SpatialToolDB addresses this by classifying over 600 ST analytical tools and providing access to processed datasets.
Researchers at Tokyo Metropolitan University have created a neutral molecule that can carry DNA into biological cells using a process called annealing. This breakthrough promises more effective therapies by reducing inflammation and improving delivery efficiency.
The study identified glutamate-dopamine co-transmitting neurons as critical for regulating reward behavior, with disruptions in VTA communication leading to impaired nicotine response. This research provides a new perspective on the neural underpinnings of addiction and psychiatric disorders.
University of California San Diego scientists have solved how the circadian clocks within microscopic bacteria precisely control gene expression during the 24-hour cycle. The researchers identified six proteins needed to rebuild this clock, generating a simplified cyanobacterial system with a clock that only needs.
Researchers at the Netherlands Cancer Institute developed a deep learning model PARM that predicts gene regulation with unprecedented accuracy. The model enables the prediction of functional impact of regulatory mutations in specific cell types, opening new paths for cancer diagnostics and patient stratification.
Professor Kazuya Yamagata received the 2025 Erwin von Bâlz Prize Second Prize for his groundbreaking research on pancreatic Ò-cell transcription factors and their role in monogenic diabetes. His work significantly deepens our understanding of β-cell function and diabetes pathophysiology.
A recent study published in PNAS reveals a novel non-coding RNA molecule, CUL1-IPA, that regulates key cellular functions and supports the structural integrity of the nucleolus. The discovery suggests this molecule may influence patient survival in certain blood cancers.
The German Research Foundation (DFG) has funded a three-year project to investigate epigenetic memory in nerve cells. The goal is to understand how gene expressions are preserved via epigenetic regulation, which plays a key role in learning ability, memory function, and healthy brain development.
Researchers discovered a crucial role of alternative RNA splicing in schizophrenia by identifying genetic variants affecting splicing and protein isoforms. The study highlights the significance of unannotated isoforms in disease pathogenesis and suggests potential avenues for targeted therapeutic strategies.
The study reveals that low levels of CTDNEP1 drive early and deadly pancreatic tumors, highlighting its role as a tumor suppressor. Tumors with low CTDNEP1 expression showed stronger metabolic activity and immune evasion.
Researchers have created a comprehensive map of the DNA sequences that control gene expression in human cells, identifying 2.37 million potential regulatory elements. This registry reveals previously unrecognized classes of elements and illuminates how noncoding genetic variation contributes to cell type-specific traits.
Research reveals molecular interaction between environmental and genetic risk factors triggers MS. EBV and gene variants HLA-DR15 haplotype play key roles in disease onset.
Researchers from The University of Osaka discovered that loss of heterochromatin can trigger genetic changes leading to chromosomal rearrangements and diseases like cancer. Accumulation of R-loops at pericentromeric repeats was found to be a key mechanism in this process.
Researchers discovered how the Lsr2 protein in Mycobacterium tuberculosis (Mtb) protects against foreign DNA inserted into its genome. This mechanism involves the protein forming condensates that silence specific regions of Mtb DNA, preventing harm to the bacteria.
The study created a critical framework for understanding the architecture of the genome and its association with gene function in cells. The 4DN Consortium integrated data from over a dozen techniques to compile an extensive catalogue of looping interactions between genes and regulatory elements.
Researchers discovered that high levels of protein BATF2 drive tumor immune suppression in head and neck cancer. Glutamine in the tumor microenvironment silences BATF2, affecting the STING signaling pathway and overall immune response.
Researchers identified common aging-related alterations in genes involved in RNA splicing and processing across eight human tissues. These findings suggest a shared biological response to aging, pointing to the importance of RNA processing in accurate protein production.
Researchers create a novel mathematical framework to control biological noise, enabling precise single-cell control. The 'Noise Robust Perfect Adaptation' technology suppresses stochastic fluctuations while maintaining stable average behavior, with promising applications in cancer therapy and synthetic biology.
A deep learning framework called PRTS accurately predicts single-cell-resolution spatial transcriptomics from H&E-stained histology images. The model identifies 21 cell subtypes in mouse brain and maintains prediction accuracy in human breast and lung cancer tissues.
New research reveals that DNA's physical property of supercoiling is crucial for cells to respond to oestrogens. The study found that enzymes called topoisomerases regulate DNA coiling and activate target genes.
Researchers found that two proteins in the CCR4-NOT complex have opposing roles in controlling genetic messages, with one destabilizing and the other steadying mRNA. This balance is critical to gene regulation and understanding cellular differentiation, adaptation to environmental stimuli, and disease mechanisms.
Researchers have discovered a small RNA molecule that plays a key role in controlling cholesterol production and the development of heart disease. The molecule, tsRNA-Glu-CTC, was found to boost SREBP2 activity, leading to higher cholesterol levels and increased risk of atherosclerosis.
Researchers discovered the biosynthetic pathway of glycitein, a key soybean isoflavonoid, and its role in plant immunity. They found that GmIF6H1 enzyme catalyzes the production of glycitein, which acts synergistically with glyceollins to defend soybeans against infection by Phytophthora sojae.
A new study found that rising temperatures are driving changes in polar bear DNA, which may help them adapt to increasingly challenging environments. The researchers discovered that genes related to heat-stress, aging, and metabolism are behaving differently in polar bears living in southeastern Greenland.
A new method developed by Penn State researchers improves the analysis of genetic data, identifying more genes associated with neurodegenerative diseases like Alzheimer's and ALS. The technique, BASIC, integrates both bulk tissue samples and single-cell data to uncover shared genetic effects across different cell types.