Articles tagged with Genomic Dna
Researchers developed an AI model called GROVER that treats human DNA as a text, learning its rules and context to draw functional information about the DNA sequences. The tool has the potential to unlock the genetic code and advance personalized medicine.
A world-first study by University of Otago researchers found the genetic basis for brushtail possum fur colour, revealing grey and black variations. The discovery sheds light on evolution of fur colour in marsupials, with implications for understanding adaptation to environments.
Researchers at KAUST have developed NanoRanger, an accurate and rapid method for genetically diagnosing Mendelian genetic disorders. This breakthrough enables diagnosis in just 12 minutes, providing a detailed picture of the genomic disorder.
Researchers have developed ENGRAM, a method that records cell signals and biological states as they occur inside living cells. This approach offers a novel way to capture biological information in living systems, potentially helping answer questions about cellular pasts and futures.
A new study has generated a global catalog of human gene expression data from around the world, increasing representation of understudied populations. The increased diversity empowers researchers to attain more-accurate insights into genetic factors driving human variation and disease risk.
Researchers at Texas A&M University uncovered how domestic rabbits become feral in the wild through natural selection. They found that all European, South American, and Oceania rabbits had a mix of feral and domestic DNA, explaining why they quickly adapted to living in the wild.
A team has assembled the genome and 3D chromosomal structures of a 52,000-year-old woolly mammoth for the first time. The preserved chromosomes revealed the mammoth's genomic organization and active genes in its skin tissue.
Researchers developed an innovative gene-writing technology based on R2 retrotransposons, enabling efficient and precise targeted gene integration in human cells. The en-R2Tg system achieves high gene integration specificity at the 28S rDNA safe harbor site, reducing mutagenesis risks.
A team of scientists at Gladstone Institutes has developed a new method that enables them to make precise edits in multiple locations within a cell—all at once. They created a tool using molecules called retrons to efficiently modify DNA in bacteria, yeast, and human cells.
Researchers discovered that phage viruses have weaponized mobile introns to sabotage competing viruses' reproduction. This finding has significant implications for understanding the evolution of genomes and developing effective phage therapy against antibiotic-resistant bacteria.
Researchers at Arizona State University created a detailed map of the 3'UTR regions of RNA in C. elegans, revealing crucial elements for gene regulation and protein production. The study provides valuable insights into the machinery of gene control, shedding light on fundamental biological processes essential to human health and disease.
A new study has identified potential cancer drivers hidden in so-called 'junk' regions of DNA, which could lead to early diagnosis and new treatments. The discovery reveals mutations in previously overlooked regions of the genome that may contribute to the formation and progression of at least 12 different cancers.
Researchers at Weill Cornell Medicine developed an artificial intelligence-powered method for detecting tumor DNA in blood, showing high sensitivity and accuracy in predicting cancer recurrence. The technology, called MRD-EDGE, can detect subtle patterns in sequencing data to distinguish between cancer and non-cancerous signals.
Researchers at MIT develop a glassy, amber-like polymer that can store DNA at room temperature while protecting the molecules from damage caused by heat or water. The T-REX method allows easy removal of DNA without damaging it, making it a promising technology for storing digital information on DNA.
Genome sequencing outperforms exome sequencing in diagnosing rare genetic diseases, revealing new clues and mechanisms. The method's advantages include detecting non-coding mutations and gene segments outside the exome.
Researchers from the University of Illinois have used CRISPR/Cas9 to alter the upstream regulatory DNA of a food crop, increasing gene expression and improving downstream photosynthesis. This approach, which does not require adding foreign DNA, has shown promising results in increasing photosynthetic activity in rice.
Researchers have characterized the diversity of DNA transposons and expanded the genome engineering toolbox. They identified 40 novel transposons with activity in human cells, significantly expanding their evolutionary diversity.
A new study found that combining histone deacetylase inhibitors, poly (ADP ribose) polymerase inhibitors, and decitabine resulted in synergistic cytotoxicity in all cell lines tested. This combination impaired DNA repair pathways and altered epigenetic regulation of gene expression.
Giant viruses have been found living on the surface ice and snow of Greenland, regulating algae growth. These viruses, which are larger than bacteria and have a much bigger genome, feed on snow algae and could work as a natural control mechanism to reduce ice melting caused by algal blooms.
Scientists at Gladstone Institutes developed two new tools for single-molecule analysis, slashing the amount of DNA needed by 90 to 95 percent. The SMRT-Tag tool allows researchers to study DNA at single-molecule resolution using as few as 10,000 cells, enabling the analysis of tumor biopsies and other clinically relevant samples.
Researchers at La Jolla Institute for Immunology developed a computational method to link gene activity to molecular marks on DNA, potentially aiding in the detection of solid tumors and more accurate cancer diagnoses. This new approach utilizes machine learning tools to identify connections between genes and enhancers in the genome.
Researchers at Harvard University have successfully sequenced the genome of the extinct little bush moa, providing new genetic evidence about its sensory biology. The study sheds light on how and why some birds evolved to become flightless, offering clues for future de-extinction efforts.
A new Research Training Group will investigate the evolution of nuclear genomes in organisms using different forms of reproduction, including asexual and sexual reproduction. The group aims to better understand the dominance of sexual reproduction in nature through empirical analysis of changing and evolving genomes.
Researchers have developed a new gene-editing system called multiplexed orthogonal base editors (MOBEs) to tackle complex diseases. MOBEs enable simultaneous installation of multiple point mutations across the genome, reducing the risks associated with traditional gene-editing tools like CRISPR-Cas9.
Researchers at Clemson University discovered that certain Neanderthal-derived genetic variations are more common in people with autism than in the general population. These findings suggest long-term effects of ancient human hybridization on brain organization and function, potentially leading to earlier diagnostics.
Researchers found that ARID1A mutation renders tumors sensitive to immunotherapy by triggering an antiviral immune response. This could lead to improved patient outcomes and the development of targeted therapies.
A KAUST team developed a simple approach to tackle CRISPR's deletion issue by targeting error-prone DNA repair pathways. By modulating specific genes, they reduced large deletions while enhancing homology-directed repair efficiency.
Scientists have discovered that aging clocks measure stochastic changes in cells, rather than damage accumulation. This finding suggests that aging can be predicted using the variation in cellular processes.
A team of researchers from the University of Chicago has identified a genetic mutation in a non-coding region of DNA that alters thyroid hormone regulation, leading to a rare form of congenital thyroid abnormality. This discovery sheds light on a previously unexplained phenomenon and may lead to new treatments for individuals with this...
A new study found that PARP1 is involved in the repair of telomeres, which can lead to genomic instability and cancer. Impairing this process can lead to telomere shortening and increased risk of cancer. The findings challenge existing dogma and open up new possibilities for improving cancer therapies.
Researchers created GraSSRep and rhea, tools that outperform current methods for handling repeats and structural variants in metagenomic data. These methods use self-supervised learning and graph neural networks to analyze microbiome data, offering new insights into biological processes and potential applications in antibiotic resistance.
An international team has developed the largest tree of life for flowering plants, comprising 9,500 species and 1.8 billion genetic codes. The study sheds light on the sudden appearance and diversification of angiosperms, revealing rapid evolution and new avenues for research in plant classification, identification, and conservation.
A new study reveals that different chromosomes have separate end-specific telomere-length distributions, challenging the scientific consensus. Researchers found that most telomeres were either the shortest or longest across all individuals, suggesting that specific chromosome ends may be the first to trigger stem-cell failure.
Researchers discover a critical protein complex called 55LCC that regulates protein stability during DNA replication, advancing understanding of genetic diseases and potential treatments for neurologic disorders. The study's findings suggest 55LCC plays a crucial role in ensuring smooth DNA replication progress.
Researchers developed a single-assay approach using exome sequencing data to detect large-scale pathogenic mutations, detecting 91 previously undetectable mutations. This shift could enable earlier diagnoses and save the NHS vital resources.
Researchers successfully identified the historical remains of George Washington's grandnephews and their mother using new DNA sequencing technologies. The study's findings will aid in identifying service members lost during past conflicts, including those from World War II.
NeXT Personal assay detects up to ~1,800 somatic variants specific to the patient's tumor with a detection threshold of 1.67 PPM and 99.9% specificity. The assay showed linearity over a range of 0.8 to 300,000 PPM.
A new study from Johns Hopkins Medicine found that circulating tumor DNA levels can accurately assess how gastroesophageal cancers respond to treatment and predict future prognosis. The study tracked minimal residual disease by analyzing ctDNA, showing a correlation between ctDNA clearance and cancer-free survival.
Researchers developed an improved method for G4 landscape determination, revealing that sequence property-specific constraints in the nuclear environment mitigate G4 formation. The technique, AbC G4-ChIP, captures G4s efficiently without bias, showing that depletion of a repeat-binding protein enhances net G4 capture at specific sites.
Researchers have deciphered trabectedin's precise mechanism of action, revealing its ability to induce persistent DNA breaks in cancer cells. This disruption of the transcription-coupled nucleotide excision repair (TC-NER) pathway leads to long-lasting DNA breaks that ultimately kill cancer cells.
Researchers create a technique using prime editing to quickly and easily screen cancer genes, revealing new information on p53 mutations. The method allows for the analysis of over 1,000 different mutations in the tumor suppressor gene p53, which are seen in more than half of all cancer patients.
Scientists discovered a shift in gene regulation by enhancers during embryonic development, showing both 'instructive' and 'permissive' modes of regulation. The study found that developmental stage determines which mode is dominant, allowing for rapid gene expression changes and tissue-specific control systems.
A new study uses synthetic DNA to show that yeast and mammalian cells have distinct transcription patterns, with yeast constantly transcribing genes and mammalian cells repressing them. The findings could help understand the functions of non-gene-related transcription and guide engineering of yeast for new medicines or gene therapies.
A recent study by Helmholtz Munich scientists has made significant breakthroughs in understanding how epigenetic modifications work together to regulate the genome. The research sheds light on the complex interactions between DNA, histone proteins, and epigenetic reader proteins, providing new insights into diseases such as cancer, met...
Researchers deciphered the male breast cancer genome, identifying gene mutations and molecular profiles that could impact diagnosis and treatment. The study found mutations in genes known to drive cancer growth and structural variants impacting other cancer-associated genes.
The EU-funded BiCIKL project has developed a flagship outcome - the Biodiversity Knowledge Hub - a one-stop portal for understanding biodiversity research infrastructures. The consortium has also created 12 services dedicated to FAIR and linked ready-to-use biodiversity data.
A Cancer Research UK-funded study uses AI to identify two distinct subtypes of prostate cancer, termed evotypes, which could lead to personalized treatments. The discovery has the potential to improve diagnosis and treatment outcomes, saving thousands of lives in the future.
Researchers used underwater drones to collect eDNA from mesophotic corals, identifying genera and habitats. The study suggests faster and easier monitoring of coral reefs using eDNA metabarcoding methods.
A recent study published in Cell Genomics has uncovered the quantitative and qualitative mutational impacts of ionizing radiation on normal cells. The research team found that exposure to low levels of radiation resulted in an average of 14 mutations per cell, primarily causing short base deletions and complex genomic rearrangements.
A new study reveals that backtracking, a molecular event, occurs frequently throughout the genome and influences thousands of human genes. Persistent backtracking is linked to various biological processes, including cell division and tissue development.
Researchers develop epigenetic clocks based on regional disorder of DNA methylation patterns, identifying common responses and critical differences from canonical clocks. These findings suggest a fundamental decoupling of epigenetic aging processes.
Researchers have developed One-pot DTECT, a compact kit that can detect genetic signatures with high accuracy, enabling rapid point-of-care diagnosis for various applications. The tool has been shown to identify genetic mutations in sickle cell anemia patients and carriers with 100% accuracy.
Scientists have identified a vulnerability in our genomes that can cause developmental defects, such as extra fingers and heart disorders. By analyzing genomic sequences and enhancer variants, researchers found that single-letter changes to the DNA within our genomes can dramatically affect gene expression.
Researchers analyzed ancient fecal samples to assess what details of the ancient people's lives could be ascertained from these samples. The study found DNA fragments of human betaherpesvirus 5, adenovirus F, and other viral and bacterial genetic material from thousands of years ago.
Researchers have discovered genetic material of the pathogen Treponema pallidum in ancient Brazilian bones, indicating that humans suffered from diseases akin to syphilis over 2,000 years ago. This finding challenges existing theories about the spread of syphilis by Spanish conquistadors and suggests that treponematoses were already pr...
Researchers analyzed LTBR expression levels in various cancers, finding it associated with low patient survival and immune cell infiltration. The study identified LTBR as a potential target for cancer immunotherapy and marker of poor prognosis.
Researchers have uncovered novel perspectives on domestic and wild cat evolution through the use of cutting-edge genome sequencing and assembly technologies. The study highlights distinct genetic changes that will aid in future disease studies and provide crucial information for those studying feline diseases, behavior, and conservation.
A team of researchers identified a CTP-dependent transcription factor controlling Shigella virulence gene expression, providing new avenues for combating this and related bacterial pathogens. The discovery sheds light on the molecular mechanisms underlying bacterial pathogenesis.
A team of scientists has identified a previously unrecognized control point in DNA repair processes, which could lead to novel cancer therapies by inhibiting the repair of damaged cancer cells. The newly discovered GSE1-CoREST complex contains three enzymes that control DNA repair and may form the basis for improved cancer treatments.
Researchers at USC Dornsife College of Letters, Arts and Science have invented a new technique called CReATiING that simplifies and cost-effectively constructs synthetic chromosomes. The method enables the creation of complex genetic modifications by combining natural DNA segments from yeast.