Articles tagged with Genomic Dna
Researchers at Cornell University have found a new way that transposons, or 'jumping genes', can survive and propagate in bacteria with linear DNA. The study reveals that these genes can target and insert themselves at the ends of linear chromosomes, called telomeres, which is essential for their survival.
A new study highlights the need for more diversity in genomics research, as a commonly found gene variant was mistakenly linked to heart disease in people from Oceanian communities. The researchers found that the variant is actually common among healthy individuals from these regions.
PARP inhibitors have been found to be effective in treating cancers with BRCA1/2 mutations by blocking DNA repair pathways. The combination of PARPis with chemotherapeutic drugs can also improve treatment efficacy, increasing DNA damage and blocking repair processes.
Gustavsson's five-year grant aims to develop innovative tools for visualizing and analyzing DNA organization and interactions in real-time. Her project seeks to uncover the relationship between DNA structure and gene activity, with potential applications in treating diseases linked to gene regulation disruptions.
Two landmark studies show that the 3D genome structure coordinates thousands of genes to form a sperm cell. The work identifies two proteins that establish cellular memory and set up a new structure that cements the cell's future fate as a sperm cell.
Researchers have developed a new strategy to protect cancer patients from radiation-induced DNA damage using a protein from tardigrades. The approach makes use of messenger RNA encoding the protein, which is delivered to patient tissues before radiation treatment. This reduces double-stranded DNA breaks by 50% in mouse models.
Scientists found that parts of human chromosomes have evolved rapidly to enable complex brain development in humans. However, this acceleration may also lead to neurodevelopmental disorders like autism. The study used artificial neurons derived from human and chimpanzee cell lines.
Researchers introduce a dual threshold classifier to interpret circulating tumor DNA levels, enabling earlier detection of disease progression and personalized treatment. The study confirms that ctDNA levels are superior to traditional biomarkers like CA15-3.
Scientists have released new high-quality genome sequences for two critically endangered pangolin species, revealing genetic vulnerabilities and extinction risks. The research provides essential information for rescue operations and focusing on the best ways to conserve these unique animals.
A team of scientists has developed a cutting-edge technology to analyze bacterial sexually transmitted infections (STIs) using genome sequencing. The 'target enrichment' method enables high-resolution analysis of Chlamydia trachomatis and other pathogens, revealing new insights into their transmission and development pathways.
The study reveals that certain DNA regions are more prone to damage but also better repaired by cells. Transcription factors can either help or harm DNA, highlighting the importance of efficient repair in determining mutation formation.
Researchers at Stanford Medicine classified breast cancers into three main groups based on structural variations in their DNA, including repeats of oncogenes and small DNA circles. Understanding these variations could aid physicians in making decisions and point to new targeted therapeutic interventions.
Researchers at King's College London have developed a complex model of molecular 'wear-and-tear' that sheds light on how proteins age. The study found that chromatin, the DNA-protein mix, is more resilient to aging than previously thought, suggesting new avenues for anti-aging treatments.
Killer whales in Australia have been confirmed to hunt and consume the livers of white sharks, providing compelling evidence of selective predation. This finding suggests that such events may be more widespread than previously believed, with implications for maintaining ecosystem balance.
Research reveals that bacteria form species through a process called homologous recombination, which exchanges genetic material across the entire genome. This exchange acts as a cohesive force, keeping members of the same species similar and maintaining distinct species boundaries.
A team of University of Florida chemical engineers has developed a microfluidic device for DNA purification that extracts genomic DNA without centrifuges or magnetic beads. The device uses fluid flow and electric fields to remove contaminants, resulting in more accurate results and reducing DNA fragmentation.
Scientists from Gladstone Institutes developed a new method called RASAM, which made a surprising discovery that large sections of newly formed DNA are hyperaccessible for many hours. This finding holds important implications for basic understanding of biology and the development of new medicines.
Researchers found that SMC motors can pull DNA from both sides of the molecule, resolving controversies about their movement. This discovery could help understand how genes are regulated and potentially lead to new treatments for diseases like cancer and neurodegenerative disorders.
Researchers developed a system to monitor tumor-informed circulating tumor DNA (ctDNA) after comprehensive genomic profiling (CGP), enabling accurate prediction of patient outcomes. The study showed that this approach can be effectively used in conjunction with CGP data to predict cancer relapse and treatment response, improving person...
Researchers at Johns Hopkins Medicine identified a new epigenetic approach to target colorectal cancer, using a mouse protein that disrupts cancer-causing chemical changes in genes. The study found that the protein, STELLA, can be used to develop a drug strategy to treat solid tumors.
A groundbreaking study finds evidence of female political and social empowerment in ancient Britain, where land was inherited through the female line. This system, known as matrilocality, was found to be widespread across Iron Age Britain, with dominant matrilines established before 400 BC.
A new study reveals that bacteria species in Lake Mendota rapidly evolve over time, responding to changing seasonal conditions. The researchers found that hundreds of separate species would return almost fully to near copies of their genetic predecessors after a thousand or so generations of evolutionary pressures.
Researchers have created a new circuit model that accounts for small changes to the sensor's behavior, allowing it to detect protein or DNA molecules from a sample. The device could lead to earlier diagnosis of diseases and more precise therapies tailored to each patient.
A new study reveals how transcription factors navigate DNA and chromatin structures to determine cellular identity. Researchers discovered novel DNA elements as genomic signposts guiding TFs to specific genetic switches.
A new DNA sequencing test called AR-ctDETECT has been found to distinguish between patients with poor and favorable prognoses in advanced prostate cancer. The test identified circulating tumor DNA in 59% of patients and showed that detectable ctDNA was associated with worse overall survival.
A study published in PLOS Biology found that the fungal pathogen causing coffee wilt disease took up segments of DNA from a related species, F. oxysporum, contributing to successive outbreaks. This horizontal gene transfer event likely contributed to the repeated emergence of the disease on the African continent.
Researchers found that tumor cell secreted DNA in extracellular vesicles acts as a 'danger' signal to activate an anti-tumor response in the liver, reducing liver metastasis risk. The discovery improves understanding of cancer progression and anticancer immunity.
A study has identified a gene called MdTCP11 that controls the growth of compact apple trees, also known as spur-type varieties. These trees exhibit increased fruit yield and require less pruning, making them ideal for modern orchards.
A ground-breaking study found that war exposure causes adverse biological changes in children's DNA, leading to lifelong health impacts. The study discovered unique epigenetic responses to trauma, highlighting the need for further research into the long-term effects of war on children's development.
Researchers found that genetic collisions between transcription and DNA replication lead to large tandem duplications in cancer cells, which can be identified through dosage imbalance. These duplicates are associated with poor patient survival and high correlation with mutations in genes TP53, CDK12, and SPOP.
A team of biologists at UT Arlington has discovered a new species of gecko, Pseudogonatodes fuscofortunatus, with distinct skeletal features and genetic data. The discovery highlights the unique characteristics of this tiny lizard, found in the Paria Peninsula of Venezuela.
Iowa State researchers discovered a surprising chromatin arrangement in two species of turtles, which may shed light on the evolution of vertebrate genomes. The study's findings could have potential biomedical applications, such as treating strokes or cryogenic preservation of human tissues.
Ancient DNA from Pompeii's body casts reveals diverse genomic backgrounds and cosmopolitan ancestry, contradicting long-held assumptions about sex and family relationships. The findings highlight the importance of integrating genetic data with archaeological and historical information to avoid misinterpretations.
Researchers found that plants have multiple enzymes for adding methyl groups to DNA, allowing them to override genetic instructions. The study reveals the evolutionary history of these enzymes and their unique structures, providing insights into plant resilience to environmental changes.
Researchers discovered Werner syndrome gene WRN plays a crucial role in maintaining constitutive heterochromatin structure, essential for DNA stability. Loss of WRN function disrupts protein interactions, potentially accelerating aging due to cellular disorganization.
Researchers from The University of Texas at Arlington are conducting a DNA analysis project to determine the genetic differences between the rare Dixon's whiptail and the common checkered whiptail. If the two species are found to be distinct, Dixon's whiptail may become eligible for endangered species protection.
A new study by UT Health San Antonio reveals that BRCA1 plays a crucial role in promoting error-free DNA repair through the activation of end resection enzymes. This understanding sheds light on the tumor suppressor function of BRCA1 and has important implications for breast and other cancers.
A new genomic study reveals high genetic diversity and low inbreeding in the endangered Oriental Stork population, a common finding in many critically endangered species. The study provides hope for the species' long-term survival and suggests that protecting its habitats could rapidly rescue this species from extinction.
Researchers at Colorado State University have identified an alternate method to study changes during the DNA replication process in lab settings using genetically modified yeast. This new approach provides a less toxic and quickly reversible alternative to hydroxyurea, allowing for better insight into cell cycle arrest mechanisms.
The study found that frequent users of high-potency cannabis had changes in genes related to mitochondrial and immune function, particularly the CAVIN1 gene. This effect was not explained by tobacco's impact on DNA methylation. The research provides valuable insights into how cannabis use may alter biological processes.
A team of researchers has identified the USP50 protein's role in regulating DNA replication by deciding which enzymes to use during critical processes. The study found that USP50 helps cells balance nuclease and helicase activity, preventing replication defects when it is absent.
Researchers at Weill Cornell Medicine discovered that antiviral enzymes and chemotherapy can cause early mutations in bladder cancer, leading to resistance to treatment. Complex circular DNA structures also play a key role in driving the progression of urothelial carcinoma, a common type of bladder cancer.
A UCLA-led study has mapped DNA modification in the developing human brain, shedding light on how gene regulation evolves and shapes lifelong mental health. The research provides new insights into early brain development and its connection to neuropsychiatric conditions like schizophrenia and autism spectrum disorder.
A new mechanism of DNA damage response has been identified, involving an RNA transcript that regulates genome stability. The study found that NEAT1, a long non-coding RNA transcript, plays a crucial role in recognizing and repairing DNA double-strand breaks.
For the first time, researchers have demonstrated how mechanical forces affect gene expression by showing that RNAP polymerase remains on the DNA template and can be pulled to start a subsequent cycle of transcription. This force-directed recycling mechanism can change the relative abundance of adjacent genes.
Researchers compared epigenetic changes across the genome in young adults who vaped, smoked or did not use nicotine products, finding a tumor-suppressor gene among the key findings. The study found substantial overlap in DNA methylation patterns between people who vaped versus those who smoked.
Researchers developed a compact 'gene scissor' tool, TnpB, which shows a 4.4-fold increase in efficiency of modifying DNA, making it more effective as a gene editing tool. The tool can be used to treat patients with familial hypercholesterolemia, reducing cholesterol levels by nearly 80%.
A new study provides further evidence that SARS-CoV-2, the virus responsible for COVID-19, likely originated from animals sold at the Huanan Seafood Market in Wuhan, China. The analysis of genetic data found that wildlife species such as raccoon dogs and civet cats were present at the market and may have carried the virus.
A new study from European universities has developed a method to analyze wastewater data from seven major cities, identifying thousands of disease-causing bacteria, viruses, and antimicrobial resistance. This approach can detect potential health threats simultaneously, potentially preventing epidemics from escalating into outbreaks.
A massive genomic survey reveals two distinct lineages of Arctic canids that originated in the northeastern Siberian Arctic generations earlier than thought. Approximately half of all Siberian huskies bred for racing have introgression with European breeds.
A new study from the University of Copenhagen reveals that Neanderthals may have gone extinct due to their isolated lifestyle. The discovery of a male Neanderthal remains in southern France supports the hypothesis that small group sizes and limited genetic diversity contributed to their demise.
A DNA study by the University of Edinburgh has identified shared genetic links between dyslexia and attention deficit hyperactivity disorder (ADHD), affecting approximately 10% of the population. The study found that specific genetic regions overlap between the two conditions, with some genes shared between them.
A UCL-led research team has crystallized the first alternative DNA structure from the insulin gene, revealing its shape and structure. The discovery suggests that different variants in the insulin gene can form different DNA structures, which could affect insulin function and potentially play a role in diabetes development.
Researchers discovered 'context-only' TFs that boost enhancer activity and contribute to regulatory factor clusters, which regulate genes effectively. This finding provides a new understanding of cooperative environments that TFs create to regulate genes in health and disease.
Scientists have discovered over 50,000 unusual DNA structures called i-motifs in the human genome, which are concentrated in key functional areas and may play a role in regulating gene activity. This finding offers new possibilities for diagnostic and therapeutic approaches to diseases such as cancer.
Researchers at the University of Hawaii have developed a new gene editing technology that can efficiently deliver healthy genes to the body. This method addresses limitations of current methods and has shown success rates of up to 96%, potentially leading to faster and more affordable treatments for various genetic diseases.
Researchers discovered a bacterial defense strategy involving two proteins that team up to disable plasmids, which could be applied to gene editing. Guide DNA and a functional protein are key components of this system, showing promise for targeted genome editing.
Researchers at RIKEN Center for Biosystems Dynamics found multiple specialized types of DNA replication in early-stage embryos, including a period of instability prone to chromosomal copying errors. This discovery could lead to improved methods of in vitro fertilization (IVF) and better strategies for minimizing chromosomal abnormalities.
A new study reveals a link between senescent cells and the protein HIRA, which helps pack and unpack DNA. The research team discovered that HIRA is necessary for the cells to begin emitting inflammatory molecules, leading to chronic inflammation in the body.
Researchers at the University of Bologna have identified a specific location and genomic context where DNA breaks occur due to topoisomerase I inhibition. This discovery could lead to new cancer treatments by inducing DNA damage and genomic instability in cancer cells.