Articles tagged with Cancer Genomics
A recent paper emphasizes the importance of public health and prevention measures in combating cancer. The authors highlight successes in lung cancer reduction and vaccine development, suggesting that these efforts have brought about significant improvements in mortality rates. By prioritizing prevention, researchers aim to drive meani...
A research team at the University of Tokyo has identified an enzyme called Trimmer, which trims the tails of small RNAs called piRNAs. This process helps regulate jumping genes, or transposons, that can disrupt host genes and contribute to diseases like cancer.
Genomics assessments have identified actionable genetic alterations in pediatric patients with extracranial solid tumors, paving the way for individualized cancer therapy recommendations. Combined tumor and germline whole-exome sequencing has also shown diagnostic yield in children with solid tumors.
A new algorithm has been proposed to automatically search for genes in DNA sequences, making it more efficient and accurate. The BRAKER1 algorithm combines the advantages of existing tools and has already been downloaded by over 1500 laboratories worldwide.
A study found that patients younger than 50 diagnosed with non-small-cell lung cancer have a higher likelihood of having a targetable genomic alteration for which therapies exist. However, they also have an unexpectedly poor prognosis, with median survival rates ranging from 13.6 months for those over 70 to 18.2 months for those under 40.
Moffitt Cancer Center researchers discovered TBK1 plays a novel role in promoting cell division through interacting with CEP170 and NuMA proteins. Disrupting TBK1 activity prevents chromosome separation and mitosis progression.
The current scientific description of the human cell cycle is being revised due to new findings that challenge traditional understanding of DNA replication. Cancer cells exploit an unusual form of DNA replication to bypass genetic changes that cause cancer.
A new study by UC San Francisco scientists shows that the proportion of normal cells in tumor samples can skew genetic analysis results. The team used a massive dataset to examine how tumor purity affects three common genomic methods, revealing potentially disruptive effects on cancer research findings and clinical classifications.
Researchers at UMass Medical School have developed a new CRISPR/Cas9 technology that improves gene editing accuracy by nearly 100 fold. The system combines the CRISPR/Cas9 complex with a programmable DNA-binding domain to verify an additional genetic feature before cutting the genome, reducing off-target changes.
Researchers have discovered a large number of genes that are upregulated in various types of cancer, which could be used to develop early detection tests and targeted therapies. The study, published in Cancer Research, utilized two different technologies to identify 128 markers that were consistently perturbed in both datasets.
Researchers have discovered a new view of how human blood is made, resolving how different kinds of blood cells form quickly from stem cells. This finding has significant implications for understanding and treating blood disorders and diseases.
Scientists have molecularly characterized two types of the second most common kidney cancer, papillary renal cell carcinoma (PRCC), which accounts for 15-20% of kidney cancer cases. The study reveals distinct molecular differences between Type 1 and 2 PRCC, as well as three subtypes of Type 2, each with varying molecular alterations. T...
The project aims to analyze core replication complexes crucial for repairing damaged DNA and understanding cancer initiation and progression. The study may lead to insights into human health and disease, particularly cancer susceptibility.
A mutation in a key enzyme affects sphingolipid levels, leading to neurodegeneration. Researchers found that increased 20-carbon sphingolipids cause problems with neuronal membranes.
A new procedure called CAUSEL uses genetic fine mapping, epigenomic profiling, epigenomic editing, genome editing, and phenotypic analysis to pinpoint disease-causing variants in non-coding genomes. The approach has shown promise in identifying disease-associated variants in prostate cancer risk.
The University of Maryland has received a $1.8 million grant from the National Institutes of Health to improve Bioconductor, an open-source data visualization software used in genomic marker identification for cancer and other diseases.
Krishnakumar Kizhatil has been awarded the prestigious Lewis Rudin Glaucoma Prize for his research on Schlemm's canal, a unique vessel that plays a key role in glaucoma. The prize recognizes Kizhatil's work as a major breakthrough in understanding the molecular basis of intraocular pressure elevation and its link to glaucoma.
A new method for personalizing bladder cancer treatments has been developed by researchers at the University of California - Davis Health. The approach uses tumor xenografts to identify effective therapies, which can be tested in mice before being administered to patients.
A study found a significant association between long telomere length and increased risk of lung adenocarcinoma. Long telomeres were associated with more rounds of cell division, potentially allowing for more opportunities to accumulate carcinogenic mutations.
The MD Anderson Cancer Center has been selected as a Genome Characterization Center to analyze patient samples from multiple NCI programs. The center will focus on functional proteomics, enabling the study of protein expression and modification in cancer tumors.
A study of 85 common chemicals found that 50 disrupted cell function in ways correlated with early cancer patterns. The researchers suggest these molecules may be acting in synergy to increase cancer activity.
Researchers at PolyU have developed a novel big data analysis platform that unveils the unregulated patterns of gene network in cancer. The platform discovers potential diagnostic and therapeutic target genes, including Nucleophosmin (NPM1), for Chronic Myelogenous Leukemia (CML).
Researchers identified four melanoma subtypes, including BRAF, RAS, NF1 and Triple-WT, through analysis of 331 patient samples. These subtypes share common signaling pathways but differ in activation, suggesting potential for targeted therapies.
A new study suggests that cell fusion can initiate cancerous processes and tumor formation through 'genomic catastrophe', leading to chromosomal instability and DNA damage. Fused cells from rat intestinal epithelial cells formed tumors in immunodeficient mice, providing evidence for a molecular mechanism driving neoplastic transformation.
Scientists detected a distinct accumulation of mutations at sites where CTCF and cohesin bind DNA, protecting these sites from mutations. The study's findings reveal new insights into the regulation of gene expression and chromatin structure in cancer.
Researchers found that Non-Invasive Prenatal Testing (NIPT) can detect maternal cancers at an early stage, before symptoms appear. The study identified three different early-stage cancers in three women and showed the potential of NIPT for non-invasive cancer screening.
The Jackson Laboratory will receive a $100,000 grant from The Arthur Vining Davis Foundations to support its 'Teaching the Genome Generation' program, which provides hands-on lab experience for high school science and math teachers. This program aims to prepare students for careers in genome-based healthcare.
A new genomic test has been validated for detecting lung cancer with high sensitivity, allowing physicians to identify patients at low probability of having the disease. This test can spare patients from costly and risky procedures, improving diagnosis and patient anxiety.
A study published by the GTEx Project Consortia reveals that gene expression variation differs more between organs than individuals, with over 750 genes linked to sex and ethnicity. The research also found that 2,000 genes vary with age, including those related to neurodegenerative diseases.
Researchers at the University of Utah Health have discovered patterns in DNA anomalies that predict a woman's outcome significantly better than tumor stage, also indicating how well she'll respond to platinum therapy. The new method could lead to personalized prognostic and diagnostic laboratory tests.
Researchers at the University of Texas MD Anderson Cancer Center review the potential of combining genomically targeted therapies with immune checkpoint blockade drugs to attack cancer. The approach shows promise, but more support is needed to accelerate progress and minimize side effects.
Dr. William Hahn receives the 39th annual AACR-Rosenthal Memorial Award for his seminal work on cancer initiation, maintenance, and progression. His research provides a foundation for novel therapeutic approaches now being tested in the clinic.
A multi-disciplinary team from Singapore has characterised genetic changes associated with liver metastasis in colorectal cancer, enabling the development of personalised diagnostic tests. The research could lead to improved treatment and cure rates for patients.
Berkeley Lab scientists discovered that genetic makeup affects cancer risk from low-dose radiation, identifying key regions in the genome and tumor microenvironment. The findings could lead to genetic screening tests to identify people at high risk of cancer after exposure.
A study published in JNCI found that most online cancer care websites offer nonstandard and unvalidated genetic tests, despite marketing them as personalized and effective. The vast majority of companies promoting these tests do not have evidence to support their clinical utility.
Researchers have generated and analyzed reference epigenome maps for 111 human cell types, revealing the complex interplay between genetic and environmental factors in shaping our genome. This breakthrough has significant implications for understanding and treating diseases such as cancer and Alzheimer's.
A study published in JAMA Oncology found that at least one clinically relevant genomic alteration was present in most samples tested, suggesting a potential for personalized therapy. The research analyzed 200 cancer of unknown primary site (CUP) samples and identified 169 specimens with potentially targetable genomic alterations.
Researchers found that non-mutated CLL shows increased gene expression variability, while mutated leukaemia has lower variability. This variation is linked to tumour aggressiveness and may help predict disease subtype.
Scientists have made the largest ever catalogue of biological chimeras available to the public domain. The new database comprises over 29,000 small RNA molecules that originate from different genomic regions, which could reveal useful markers for clinical oncology practice and novel drug targets for cancer treatment.
A comprehensive catalog of genetic mutations has been published for 279 head and neck cancers, revealing distinct genetic profiles for HPV-positive and -negative patients. This finding may lead to the development of targeted therapies and improved outcomes for these cancer types.
A groundbreaking TGen-led discovery has identified the likely genetic cause of a rare form of ovarian cancer that affects young women and girls. The study found nearly universal underpinnings for this disease, which usually presents in advanced stages and is resistant to standard chemotherapy.
The American Society of Clinical Oncology (ASCO) announces its cancer Advance of the Year, four new treatments improving outlook for patients with chronic lymphocytic leukemia (CLL). New therapies include immunotherapy drugs and molecularly targeted drugs offering more effective treatment options.
The Tenth Annual Meeting of the International Conference on Genomics will focus on breakthroughs and advancements in 'omics' research transforming scientific discoveries into better health. Confirmed plenary speakers include prominent figures in the field, highlighting the most influential topics and practical applications.
The University of Chicago is establishing the nation's most comprehensive computational facility to store and harmonize cancer genomic data, expanding access for scientists. The Genomic Data Commons will provide an interactive system for researchers to analyze and identify potential therapeutic targets.
Researchers at A*STAR's Genome Institute of Singapore identified a biomarker called RASAL2 strongly associated with triple negative breast cancer, a highly aggressive form of the disease. High expression levels of RASAL2 in TNBC tumors correlate with lower survival rates and increased metastasis.
Two studies found a subset of somatic mutations in DNA samples from healthy individuals that significantly increase the risk of developing blood cancers. The 'pre-malignant' state becomes more common with age and can be detected by sequencing DNA from blood.
Research reveals Chlamydia trachomatis breaks down protective protein p53, allowing cells to mutate and develop into cancer. The bacterium exploits this mechanism to survive within host cells, posing a potential risk for cancer development.
Dr. John Carpten, Deputy Director of TGen, receives AACR Distinguished Lectureship for his work on cancer health disparities in minority populations. He will deliver a keynote lecture on November 9 at the AACR conference.
Researchers develop mathematical toolkit that analyzes cancer mutation data, revealing common and rare mutations have equal impact on tumor behavior. The study also finds that mutations cause subtle, precise alterations in protein communication pathways, enabling targeted therapies.
A comprehensive analysis of nearly 500 papillary thyroid carcinomas has provided new insights into the roles of frequently mutated cancer genes. The study identified molecular subtypes that can help clinicians determine tumor aggressiveness and potential responses to treatments.
A comprehensive analysis of thyroid cancer has identified markers of aggressive tumors, which could lead to better targeting of treatments. The study suggests the potential to reclassify the disease based on genetic markers and moves thyroid cancer into a position to benefit from precision medicine.
Scientists have discovered a new role for Dicer in preventing genome damage caused by collisions during DNA replication. The protein helps free transcription machinery from DNA, preserving the integrity of the genome. This discovery may help explain why mutations in Dicer are associated with increased risk of cancer and aging.
Researchers developed a new blood test called the lymphocyte genome sensitivity (LGS) test, which can detect some cancers earlier than ever before. The test analyzes white blood cells exposed to UVA light and measures their DNA damage, allowing for early cancer detection and identifying those at risk of developing cancer.
Researchers at Moffitt Cancer Center have discovered 23 new regions of the genome linked to prostate cancer risk, with testing potentially identifying men with a six times higher risk. This brings the total number of genetic variants linked to prostate cancer to 100.
Researchers developed a genomic-based system, IntClust, to classify breast cancer subtypes with high accuracy. The new system identified previously unnoticed subgroups of tumors, including those resistant to treatment, potentially leading to early detection and targeted therapies.
Researchers have found that cancers exhibit distinct patterns of methylation on the DNA genome, enabling tumor cells to turn genes on or off as needed. These epigenetic changes allow cancer cells to adapt and spread, making them a key factor in tumor development.
Researchers have identified a biomarker, STAT3 protein, strongly associated with basal-like breast cancer, a highly aggressive and resistant carcinoma. This finding suggests a potential target for new therapeutics designed to treat this deadly cancer subtype.
Researchers analyzed over 3500 tumors using multiple genomic platforms, revealing that cancers are more likely to be molecularly and genetically similar based on their cell type. The study proposes a new classification system that could lead to personalized cancer treatment and eligibility for novel therapeutics.
A new study analyzing over 3,500 tumor samples reveals that many cancers can be classified differently based on cellular and molecular criteria. The research suggests that patients may benefit from more accurate diagnoses and tailored treatments, with potential implications for personalized cancer therapy.
Researchers discovered two distinct molecular clocks operating at different stages of tumor growth, with implications for chemotherapy resistance and prognosis. The study used single-cell genome sequencing to profile thousands of cells, providing insights into genomic diversity and its potential clinical applications.