A team developed a new way to sequence genomes, assembling the Zika virus mosquito genome for less than $10,000. This allows for rapid creation of reference genomes for all species, including humans, tumors, and patients, enabling better diagnosis and treatment.
SourceBaylor College of Medicine·JournalScience·DateMar 23, 2017
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A team of researchers has developed a new method, called 3D genome assembly, that can create a human reference genome from scratch for less than $10,000. This technology allows scientists to assemble the genome of Zika virus-carrying mosquitoes at a fraction of the cost and time required by traditional methods.
SourceBaylor College of Medicine·JournalScience·DateMar 23, 2017
Researchers found thousands of genetic translocations in both healthy and cancerous mouse cells, highlighting the importance of considering individual genetic backgrounds. By using 'de novo assembly', scientists can compare a patient's cancer cells to their own healthy cells, reducing errors in translocation discovery.
SourceUniversity of Colorado Anschutz Medical Campus·JournalBMC Genomics·DateOct 27, 2016
Researchers are developing a new reference genome sequence for domestic horses to better understand genetics in animal health and well-being. The new sequence aims to improve the ability to identify diseases and traits in horses.
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A recent genomics study reveals that comparing diseased patients' genomes with those of people from similar ancestries can dramatically simplify searches for harmful mutations, potentially leading to more effective treatments. The study's tool, the Scripps Genome Adviser, uses a reference panel of less than 20 genomes to identify ances...
SourceScripps Research Institute·JournalFrontiers in Genetics·DateOct 25, 2012
Using the foxtail millet genome as a reference, researchers have developed genetic tools for switchgrass, a promising biofuels feedstock. The high-quality genome allows for efficient transformation methods and understanding of adaptation mechanisms, making it an ideal model system for studying grasses.
SourceDonald Danforth Plant Science Center·JournalNature Biotechnology·DateMay 14, 2012
A study introduces ethnicity-specific reference genome sequences to analyze whole-genome sequencing data, improving disease risk assessment. The approach was demonstrated in a four-person family and showed increased accuracy in detecting rare variants and reducing errors.
The Baylor College of Medicine team has successfully sequenced 178 microbial reference genomes representative of the human body. These reference genomes will help scientists understand and contextualize the data accumulated over time, providing valuable insights into the complex relationship between humans and their microbiota.
SourceBaylor College of Medicine·JournalScience·DateMay 20, 2010
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Researchers have discovered 2,363 new DNA sequences corresponding to 730 regions on the human genome, representing segments not charted in the reference map. The findings suggest that new genome assemblies based solely on next-generation sequencing might miss many of these sites.
SourceUniversity of Washington·JournalNature Methods·DateApr 20, 2010