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National Institutes of Natural Sciences


Breaking through AlphaFold’s limits to predict how proteins change shape

Researchers have developed a novel AlphaFold-based method that introduces a repulsive force between predicted structures, allowing for the sampling of multiple conformational states. This enables the prediction of diverse protein conformations rapidly and accurately, with potential applications in drug design and protein engineering.

SourceNational Institutes of Natural Sciences·JournalJACS Au·TypeComputational simulation/modeling·DateAug 31, 2026

Capturing fleeting changes in “nanoscale light”—femtosecond nano-imaging reveals ultrafast optical control of phonon polariton

Researchers developed an ultrafast infrared near-field optical microscopy technique that enables frequency-selective imaging of phonon polariton without sacrificing ultrafast time resolution. The technique reveals ultrafast optical modulation of phonon polariton in van der Waals heterostructures.

SourceNational Institutes of Natural Sciences·JournalNano Letters·TypeExperimental study·DateAug 30, 2026

Japan’s first full-stack neutral-atom quantum computer “Shunkai” is operational

Shunkai, developed by Professor Kenji Ohmori's team, integrates multiple layers for practical quantum computing, overcoming scalability and error correction challenges. The system uses 50 qubits initially, with plans to expand to 500 qubits, and will be partially open to external users for application development and demonstration.

SourceNational Institutes of Natural Sciences·TypeExperimental study·DateAug 23, 2026

Water freeze-drying (WFD) method, a specimen preparation technique for scanning electron microscopy (SEM), was effectively applied to the observation of bacterial ultrastructure

Researchers successfully applied water freeze-drying to bacterial specimens, preserving native ultrastructure and reducing artifacts. The WFD method avoids chemical fixation and organic solvents, making it a practical and accessible strategy for high-resolution SEM analysis.

SourceNational Institutes of Natural Sciences·JournalFrontiers in Microbiology·TypeExperimental study·DateAug 18, 2026

Do human noroviruses also switch their shape?

Human norovirus, a leading cause of gastroenteritis, exhibits conformational changes in its capsid structure, influencing viral infectivity and immune evasion. The study's findings provide a new understanding of the virus's dynamics and may lead to the development of next-generation vaccines and antiviral therapies.

SourceNational Institutes of Natural Sciences·JournalInternational Journal of Molecular Sciences·TypeExperimental study·DateAug 4, 2026

Element-specific x-ray study shows both iron and cobalt suppress thermal expansion in stainless invar alloys, with iron's effect stronger

Researchers used synchrotron X-ray absorption spectroscopy and atomic-scale computer simulation to measure how iron and cobalt atoms individually respond to temperature change. Iron and cobalt both contribute to suppressing thermal expansion, but iron's effect is stronger and shifts with small changes in the iron-to-cobalt ratio.

SourceNational Institutes of Natural Sciences·JournalJournal of Alloys and Compounds·TypeExperimental study·DateAug 3, 2026

Review: How heme converts environmental gases into cellular signals

A new review reveals that heme converts tiny chemical changes into larger biological responses, regulating functions from microbial metabolism to mammalian signaling. Labile heme, a small and dynamic fraction of heme, plays a crucial role in this process, allowing for finely tuned sensitivity to environmental conditions.

SourceNational Institutes of Natural Sciences·JournalBulletin of the Chemical Society of Japan·TypeLiterature review·DateJul 30, 2026

Realization of an atom-holography microscope for direct visualization of three-dimensional atomic arrangements in nanoscale regions

A collaborative research group has developed an atom-holography microscope that can directly visualize three-dimensional atomic arrangements in nanoscale regions using electron-beam excitation. This breakthrough enables element-specific analysis of three-dimensional atomic structures without the need for synchrotron radiation.

SourceNational Institutes of Natural Sciences·JournalReview of Scientific Instruments·TypeExperimental study·DateJul 29, 2026

Beyond the paddle-wheel mechanism: Elucidating the microscopic lithium ion transport in solid-state electrolytes for next-generation batteries

Researchers discovered that lithium ions move through cooperative rearrangement of 'ion cages' formed by surrounding anions, not the previously proposed paddle-wheel mechanism. This finding provides new guidelines for designing safe and high-performance solid electrolytes.

SourceNational Institutes of Natural Sciences·JournalJournal of the American Chemical Society·TypeExperimental study·DateJul 22, 2026

Crystalline spiroborate-linked 3D Frameworks

Researchers have synthesized and determined the structure of a borate-linked 3D crystalline covalent organic framework, expanding the synthesis and implementation of highly ordered frameworks. The discovery paves the way for their use in advanced applications such as carbon sequestration, environmental remediation, and drug delivery.

SourceNational Institutes of Natural Sciences·JournalScience Advances·TypeExperimental study·DateJul 10, 2026

Double-bond character of phosphates in solid and liquid phases probed by oxygen K-edge X-ray absorption spectroscopy

Researchers investigated phosphate double-bond character in solid and liquid phases using oxygen K-edge X-ray absorption spectroscopy. The study found that the double-bond character increased with increasing negative charge in the solid phase, but decreased in aqueous solutions due to interactions between phosphates and Na+ ions.

SourceNational Institutes of Natural Sciences·JournalThe Journal of Physical Chemistry Letters·TypeExperimental study·DateJun 25, 2026

Lithium-doped carbon nanorings show promise for next-generation optical devices

Researchers discovered that lithium doping of a 12-benzene-ring molecule creates a material with strong optical responses due to synergistic effects between aromaticity and charge transfer. This finding establishes fundamental design principles for high-performance carbon-based photonic devices.

SourceNational Institutes of Natural Sciences·JournalChemical Physics·TypeComputational simulation/modeling·DateJun 22, 2026

Simultaneous measurements of solid–liquid interfaces and bulk liquids using soft X-ray absorption spectroscopy

Scientists have developed a method to measure the electronic structures of liquid water and organic molecules using soft X-ray absorption spectroscopy. By controlling the thickness of the liquid layer, they obtained XAS spectra of both the bulk liquid and the solid-liquid interface.

SourceNational Institutes of Natural Sciences·JournalJournal of Synchrotron Radiation·TypeExperimental study·DateJun 4, 2026

Using a single atom as a “camera” - visualization of light intensity and polarization beyond the resolution limit of optical microscopes -

Researchers use a single rubidium atom trapped in an optical tweezer as a scanning probe to image fine structures of light patterns with spatial resolution surpassing the diffraction limit. The technique successfully visualizes both light intensity and polarization distributions at the nanoscale.

SourceNational Institutes of Natural Sciences·JournalNature Communications·TypeExperimental study·DateMay 29, 2026

AI and supercomputer simulations reveal how a bacterial energy-converting enzyme pumps sodium ions, paving the way for new antibiotics

The study revealed that sodium binding and electron transfer drive a precise dual trigger, pumping sodium ions across the cell membrane. This understanding provides a powerful new framework for designing targeted antibacterial drugs.

SourceNational Institutes of Natural Sciences·JournalJournal of Chemical Information and Modeling·TypeExperimental study·DateMay 14, 2026

Direct Raman detection of ångström-scale ultrathin molecular layers at interfaces

Researchers have developed a coherent Raman spectroscopy method that directly detects ångström-scale molecular films at interfaces without plasmonic enhancement or electronic resonance. This approach suppresses strong substrate background signals, allowing for highly sensitive interfacial Raman spectroscopy.

SourceNational Institutes of Natural Sciences·JournalNano Letters·TypeExperimental study·DateApr 30, 2026

New microscope reveals previously hidden differences in photosynthetic light-harvesting antennae

Researchers developed an ultrafast transient absorption microscope to analyze fluctuations and heterogeneities in light-harvesting antennae. The study revealed two kinetic components with nearly identical time constants and quantified photophysical properties associated with these components.

SourceNational Institutes of Natural Sciences·JournalThe Journal of Physical Chemistry Letters·DateApr 28, 2026

Simulations prove two stable states of opposite polarity in an Earth-like dipole magnetic field

Researchers found that a spherical-shell dynamo can exist in two stable equilibrium states, with tiny initial fluctuations determining the polarity. The study suggests that breaking this stable state is necessary to trigger magnetic reversals, possibly through mechanisms outside magnetohydrodynamic theory.

SourceNational Institutes of Natural Sciences·JournalScientific Reports·TypeComputational simulation/modeling·DateApr 23, 2026

Preserving polarization while boosting light from atomically thin semiconductors with silicon nanospheres

Researchers have demonstrated that silicon nanospheres can enhance second-harmonic generation in monolayer transition-metal dichalcogenides while preserving valley-polarization information. The study provides design guidelines for efficient, polarization-preserving nonlinear light sources at the nanoscale.

SourceNational Institutes of Natural Sciences·JournalNano Letters·TypeExperimental study·DateMar 25, 2026

NMR reveals site-specific structural signatures of therapeutic antibodies without isotope labeling

Researchers developed a novel NMR approach to analyze the structure of therapeutic antibodies without isotope labeling. The technique uses site-specific methyl signals to detect subtle structural variations, including glycosylation patterns and local flexibility. This method has significant implications for ensuring the quality of biol...

SourceNational Institutes of Natural Sciences·JournalJournal of the American Chemical Society·TypeExperimental study·DateMar 9, 2026

Breakthrough in nonlinear electrophotonics: 2000%-V⁻¹ electric enhancement of nonlinear light generation using an angstrom-scale plasmonic junction

Researchers have demonstrated an angstrom-scale electroplasmonic platform enabling giant modulation (2000% V⁻¹ ) of near-field nonlinear optical effects across a broad spectral range. The discovery provides a novel scheme for highly efficient electro-optical conversion in an infinitesimal spatial scale.

SourceNational Institutes of Natural Sciences·JournalNature Communications·TypeExperimental study·DateFeb 1, 2026

Pioneering second-order nonlinear vibrational nanoscopy for interfacial molecular systems beyond the diffraction limit

Researchers overcome spatial resolution limit of sum-frequency generation (SFG) spectroscopy by utilizing plasmonic near-field confinement. This breakthrough enables direct visualization of nanoscale orientation heterogeneity in interfacial molecular domains.

SourceNational Institutes of Natural Sciences·JournalThe Journal of Physical Chemistry C·TypeExperimental study·DateJan 18, 2026

Unveiling non-thermal catalytic origin of direct current-promoted catalysis for energy-efficient transformation of greenhouse gases to valuable chemicals

Scientists established a definitive charge-driven mechanism underlying the non-thermal catalytic enhancement observed in DC-applied DRM, focusing on Pd/CeO2 as a model catalyst. The study reveals a cooperative mechanism between trapped electrons and strain-induced holes as the microscopic origin of non-thermal catalysis under DC applic...

SourceNational Institutes of Natural Sciences·JournalThe Journal of Physical Chemistry Letters·TypeExperimental study·DateDec 16, 2025

Direct observation reveals “two-in-one” roles of plasma turbulence

Researchers at the National Institute for Fusion Science used high-precision diagnostic instruments to measure temperature, turbulence, and heat propagation in a plasma. The experiments revealed two types of turbulence: a mediator-type that connects distant regions quickly, and another type that carries heat outward more slowly.

SourceNational Institutes of Natural Sciences·JournalCommunications Physics·TypeExperimental study·DateDec 10, 2025

The gold standard: Researchers end 20-year spin debate on gold surface with definitive, full-map quantum imaging

The study definitively resolves the controversy by capturing complete two-dimensional snapshots of electron spin and orbital shape on the Au(111) Shockley surface state. The experiment unambiguously confirms the Rashba effect, establishing a robust reference dataset for spin-resolved photoemission.

SourceNational Institutes of Natural Sciences·JournalJournal of the Physical Society of Japan·TypeExperimental study·DateNov 17, 2025

First high-precision measurement of potential dynamics inside reactor-grade fusion plasma

Scientists successfully measured electric potential in plasmas using a non-contact diagnostic technique, enabling the detection of temporal transitions in internal plasma potential distribution. The method allows for improved predictive models of plasma behavior and confinement frameworks in fusion research.

SourceNational Institutes of Natural Sciences·JournalNuclear Fusion·TypeExperimental study·DateNov 12, 2025