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What keeps plant roots growing toward gravity? Study identifies four genes

Researchers have identified four genes in corn and Arabidopsis that regulate root growth in response to gravity, a trait essential for drought tolerance and efficient water use. The study's approach, leveraging genomic comparisons between distantly related species, has the potential to be applied to other traits.

SourceUniversity of Illinois College of Agricultural, Consumer and Environmental Sciences·JournalProceedings of the National Academy of Sciences·DateSep 26, 2022

​​​​​​​Researchers gain insights into the genetic and molecular machinery that predisposes individuals to Alzheimer's disease

A team of researchers from The Mount Sinai Hospital has made a groundbreaking discovery into the genetic and molecular mechanisms that predispose individuals to Alzheimer's disease. They identified 21 candidate risk genes, including SPI1, which regulates microglia and AD risk.

Largest genetic atlas for zebrafish ‘breakthrough’ for biomedical research

Researchers have created the largest genetic atlas for zebrafish, which provides a comprehensive understanding of gene expression and developmental dynamics. The atlas, developed by the DANIO-CODE consortium, offers a broad picture of candidate DNA regions for transgenic breeding and genetic research into development and diseases.

SourceUniversity of Birmingham·JournalNature Genetics·TypeMeta-analysis·DateJul 4, 2022

New genetic research on remote Pacific islands yields surprising findings on world’s earliest seafarers

Genetic analysis of ancient individuals from remote Pacific islands yields findings on family structure, social customs, and ancestral populations. The study suggests that matrilocal population structures were the rule among the world's earliest seafarers, with women often remaining in their communities after marriage.

SourceHarvard University·JournalScience·TypeComputational simulation/modeling·DateJun 30, 2022

Novel supramolecular CRISPR–Cas9 carrier enables more efficient genome editing

A team of researchers from Kumamoto University has developed a transformable polyrotaxane carrier that can facilitate genome editing using Cas9RNP with high efficiency. The carrier, called amino-PRX, is multi-step transformable and has low cytotoxicity, making it an enormously promising candidate for safe and efficient delivery.

SourceKumamoto University·JournalApplied Materials Today·TypeExperimental study·DateMay 11, 2022

Some hard-to-crack genome areas carry genes that make us distinctly humans

The completed human genome assembly has revealed new insights into human evolution and diseases. Researchers found that highly repetitive regions, including segmental duplications, contain genes critical for brain development and function. These findings shed light on the genetic factors that make humans distinct from other primates.

SourceUniversity of Washington School of Medicine/UW Medicine·JournalScience·TypeExperimental study·DateMar 31, 2022

Study probes how DNA folding might affect gene activity

Researchers have clarified the mechanism behind activating genes in drosophila fly sex cells, which may hold clues to understanding diseases. The study's findings suggest that DNA packaging plays a crucial role in regulating gene expression, with abnormal packaging potentially leading to misregulation and disease.

SourceSkolkovo Institute of Science and Technology (Skoltech)·JournalNucleic Acids Research·TypeExperimental study·DateFeb 22, 2022

The abyssal world: the last terra incognita of the Earth surface

A massive DNA sequencing project has mapped the deep-sea biodiversity, revealing a vast and unknown ecosystem that plays a crucial role in ocean food-webs and carbon sequestration. The study sheds light on the connection between surface and deep-water ecosystems, with implications for understanding climate change.

Protective gene variant against COVID-19 identified

Researchers at Karolinska Institutet have identified a specific gene variant that protects against severe COVID-19 infection, found in individuals of African ancestry. The study analyzed 2,787 hospitalized patients and 130,997 people from six cohort studies, revealing an 80% prevalence of the protective variant among Africans.

SourceKarolinska Institutet·JournalNature Genetics·TypeMeta-analysis·DateJan 13, 2022

Beating the odds in mutation’s game of chance

Researchers found that plants have evolved a way to protect their most important genes from mutation, which has significant implications for understanding crop domestication and cancer. The study discovered non-random patterns in DNA mutations, with essential genes overrepresented in regions where mutations are rare.

SourceMax-Planck-Gesellschaft·JournalNature·TypeExperimental study·DateJan 12, 2022

Fingerprint patterns are linked to limb development genes

Researchers found fingerprints influenced by genes responsible for limb development, shedding light on phenotypical traits in humans. The study identifies 43 genome regions associated with fingerprint patterns and suggests a link between dermatoglyphic patterns and congenital genetic disorders.

SourceCell Press·JournalCell·TypeObservational study·DateJan 6, 2022

Largest genetic study of suicide attempts confirms genetic underpinnings that are not driven by underlying psychiatric disorders

A large-scale genome-wide association study has identified a region on chromosome 7 containing DNA variations that increase the risk of attempting suicide. The study found overlap between the genetic basis of suicide attempts and related psychiatric disorders, as well as non-psychiatric risk factors such as smoking and sleep disturbances.

SourceThe Mount Sinai Hospital / Mount Sinai School of Medicine·JournalBiological Psychiatry·TypeObservational study·DateNov 30, 2021

Exploring the genetic ma(i)ze: Functional genomics can help molecular breeding of maize

Researchers used functional genomics to identify key genes involved in inducing callus from immature maize embryos, overcoming a major roadblock in plant breeding. The study found that nearly 30% of predicted A188 genes were structurally different from other maize lines, accounting for high protein divergence and phenotypic variations.

SourceCactus Communications·JournalThe Crop Journal·TypeObservational study·DateSep 8, 2021

Researchers speed identification of DNA regions that regulate gene expression

St. Jude Children's Research Hospital scientists have developed an integrated system to better understand and possibly manipulate gene expression for treatment of disorders like sickle cell disease and beta thalassemia. The new method identified dozens of DNA regulatory elements that orchestrate fetal-to-adult hemoglobin switch, offeri...

SourceSt. Jude Children's Research Hospital·JournalNature Genetics·DateMay 6, 2021

How genetic variation gives rise to differences in mathematical ability

A study published in PLOS Biology found that genetic variants of the ROBO1 gene in young children are associated with grey matter volume in the right parietal cortex, predicting mathematical test scores. The research suggests that genetic variability may shape mathematical ability by influencing early brain development.

SourcePLOS·JournalPLOS Biology·DateOct 22, 2020

Lost frogs rediscovered with environmental DNA

Scientists have detected signs of a frog listed as extinct using environmental DNA in two regions of Brazil. The frog, Megaelosia bocainensis, was among seven total species detected, including four declining species and two that had disappeared locally for many years.

SourceCornell University·JournalMolecular Ecology·DateSep 8, 2020

Ancient Andes, analyzed

An international team analyzed genome-wide data from 89 ancient individuals in the central Andes, revealing early genetic distinctions between groups, population mixing, and surprising genetic continuity. The study provides a comprehensive portrait of pre-Columbian Andean civilizations.

SourceHarvard Medical School·JournalCell·DateMay 7, 2020

'Jumping genes' help stabilize DNA folding patterns

Researchers found that jumping genes, also known as transposable elements, play a crucial role in stabilizing the 3D folding patterns of DNA molecules. This discovery contradicts the long-held assumption that the precise order of letters in the DNA sequence dictates the broader structure of the DNA molecule.

SourceWashU Medicine·JournalGenome Biology·DateJan 24, 2020

Genomic cut and paste using a Class 1 CRISPR system

Japanese researchers have developed a Class 1 CRISPR gene editing system that enables efficient DNA repairs in human cells with minimal off-target effects. The Cas3 protein-based approach achieves superior genome editing efficiency compared to traditional Class 2 systems, opening doors for new therapeutic applications.

SourceOsaka University·JournalNature Communications·DateDec 9, 2019

DNA repeats -- the genome's dark matter

A new method has been developed to analyze pathogenic DNA repeats in the human genome, revealing their role in genetic diseases such as Fragile X syndrome. The technique combines nanopore sequencing, stem cell culture, and CRISPR-Cas technologies to provide detailed insights into these previously inaccessible regions.

SourceMax-Planck-Gesellschaft·JournalNature Biotechnology·DateNov 22, 2019

Online tool speeds response to elephant poaching by tracing ivory to source

A new online tool uses an interactive database of genetic information to help authorities quickly identify the origin of confiscated ivory from African elephants. The Loxodonta Localizer matches genetic sequences from poached ivory to those stored in the database, providing a faster and cheaper analysis than current approaches.

Research improves understanding of mechanism of atrial fibrillation

Researchers at Baylor College of Medicine have discovered a functional link between noncoding DNA regions called Pitx2 enhancers and the expression of the Pitx2 gene in relation to atrial fibrillation. This interaction prevents predisposition to the condition by looping and folding distant Pitx2 enhancers to make contact with the gene.

SourceBaylor College of Medicine·JournalProceedings of the National Academy of Sciences·DateOct 21, 2019