Articles tagged with Protein Complexes
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Researchers have developed PaCS-Toolkit to facilitate accessible parallel cascade selection MD (PaCS-MD) simulations. The software package automates the simulation process via a single configuration file, allowing users to explore different conformations and investigate molecular interactions more efficiently.
A new case report uses longitudinal multi-omics monitoring to detect a precancerous pancreatic tumor in a patient. The study highlights the potential of blood-based LMOM for early detection and personalized medicine, warranting further translational research.
Researchers have identified a novel class of antimicrobial toxins, dubbed umbrella toxins, produced by soil bacteria Streptomyces. These toxins are large protein complexes that specifically target other Streptomyces species, making them a promising lead in the fight against antibiotic resistance.
Emerging from a need to understand organelle interactions, researchers have developed OrthoID, a novel strategy that refines protein identification at organelle contact sites. This method uses mutually orthogonal binding pairs to label and isolate proteins involved in cellular communication.
Researchers highlight the role of post-transcriptional RNA modifications in AML pathogenesis, identifying m6A and m7G regulators as potential therapeutic targets. Targeted therapies, including selective inhibitors and Traditional Chinese Medicine compounds, show promise in promoting cell differentiation and reversing AML phenotypes.
A team of researchers from Tokyo Institute of Technology identified the molecular mechanisms involved in synaptic communication using Drosophila. They found that Side-IV/Beat-IIb immunoglobulin superfamily protein molecules play a crucial role in inducing synapse formation and regulating preferential signaling among neuron pairs.
Researchers discover a critical protein complex called 55LCC that regulates protein stability during DNA replication, advancing understanding of genetic diseases and potential treatments for neurologic disorders. The study's findings suggest 55LCC plays a crucial role in ensuring smooth DNA replication progress.
Researchers discovered a protein complex that eliminates potentially harmful cells over time by measuring the duration of mitosis. The Mitotic Stopwatch Complex starts forming after prolonged mitosis and triggers cell arrest or death, providing new insights into cancer development.
Researchers at Kobe University identified differences in synaptic protein production between mice and marmosets during development. The study found that these differences may relate to evolutionary differences between rodent and primate brains, as well as their relevance to autism spectrum disorders.
Researchers at Kyoto University have discovered a signal protein called ERK that plays an active role in causing growing lung tissue to curve. This finding reveals a previously unknown regulatory system governing the development of intricate branching patterns in mouse lungs.
A team of scientists discovered new fusion sites in protein evolution that enable faster and more targeted drug development. By combining evolutionary processes with synthetic biology, they created customized biological drugs with improved therapeutic properties.
Researchers have made progress in understanding atherosclerosis, identifying potential new approaches for early detection and therapy. The study found that TREM2 regulates the activity of macrophages, playing an important role in forming unstable plaques that increase heart attack and stroke risk.
Researchers at the University of Helsinki have made a groundbreaking discovery about the Commander complex, a vital cellular machinery. The study reveals that mutations in this complex are associated with developmental disorders such as Ritscher-Schinzel syndrome and Alzheimer's Disease.
A recent study using cutting-edge super-resolution microscopy has shed light on the role of cohesin in cell division. The research revealed multiple populations of cohesin complexes, each playing a specific role in faithful genetic material segregation during cell division.
Researchers at the University of Buffalo have discovered that fusion proteins hijack gene regulatory complexes through their unfolded domains, causing cancer. The study found that these disordered domains interact with high specificity and form liquid-like droplets, enabling cancerous genes to be activated.
Researchers discovered that two types of TORC1 complexes in yeast play unique roles in cellular responses to stress and lifespan regulation. The study's findings provide new insights into molecular evolution, cellular signaling pathways, and age-related diseases, offering promising avenues for human health advancements.
Researchers have identified two essential ferredoxins that play a key role in determining the performance of iron nitrogenase. The discovery opens up new possibilities for elucidating and maximizing nitrogenase's potential, which could lead to sustainable enzymatic production of ammonia and carbon compounds.
A novel mechanism for splicing human short introns has been discovered using the SAP30BP-RBM17 complex. The researchers confirmed that the established pre-mRNA splicing mechanism cannot work in a subset of human short introns.
Scientists at the University of California, Riverside, have identified 898 RNA-dependent proteins in the deadliest human malaria parasite, Plasmodium falciparum. These findings could lead to novel therapeutic targets against malaria and highlight the importance of RNAs in biological pathways in the parasite.
Researchers discovered that aggregates prevent silencing of stress response in brain cells, leading to cell death. A new treatment involves administering a drug to turn off the stress response and keeping SIFI turned on to clean up protein aggregates.
A team of researchers at the University of Cologne has discovered a protein complex called C/EBP heterodimer that directs cells towards a dormant state in response to faulty gene expression. This mechanism, known as cellular senescence, can protect tissues from damage but also promote disease and ageing.
Researchers explore the use of traditional Chinese medicine (TCM) compounds for treating non-alcoholic fatty liver disease (NAFLD) and improving sensitivity to radiation therapy for lung cancer. TCM compounds, such as oridonin and ginsenoside Rg5, have demonstrated anti-inflammatory effects and radiosensitizing properties.
Researchers at Brookhaven National Laboratory successfully produced large quantities of human ACE2 receptor protein in mouse cells, allowing for the study of viral receptors and potentially developing new therapies. The method could also facilitate the production of other complex proteins that have proven difficult to produce.
Researchers at RIKEN successfully spin artificial spider silk that closely matches natural production, mimicking the complex molecular structure of silk. The eco-friendly innovation has potential benefits for environment and biomedical fields.
Researchers identified a key chromatin modifier-centered pathway for grain size regulation in rice, showing that HHC4 and bZIP23 interact and enhance grain size. Phosphorylation of HHC4 by TGW3 triggers negative influences on the pathway, leading to increased rice yield.
Researchers discovered that PDS5A modifies DNA loops without affecting histone modifications, enabling the study of loop-mediated gene silencing. The loss of PDS5A disrupted genome organization, leading to aberrant gene activation and potentially driving diseases like cancer and developmental disorders.
Researchers have discovered how the TamAB system helps Salmonella survive under harsh conditions inside macrophages. The study found that TamAB creates favorable conditions for the Bam complex to work, but the exact mechanism is unclear. Understanding this process could help in developing treatments for Salmonella infections.
A team of scientists has identified a previously unrecognized control point in DNA repair processes, which could lead to novel cancer therapies by inhibiting the repair of damaged cancer cells. The newly discovered GSE1-CoREST complex contains three enzymes that control DNA repair and may form the basis for improved cancer treatments.
Researchers discovered a trio of protein segments guiding chromosomal interactions in nematodes, shedding light on the complex process. The study, published in PNAS, provides new insights into meiosis and infertility, with implications for human reproductive health.
Scientists have deciphered the assemblage of apical extracellular matrices in roundworms at the nanoscale using advanced microscopy. Defects in struts result in unnatural layer swelling, and the researchers found that collagens play a crucial role in maintaining matrix structure.
Scientists at St. Jude Children's Research Hospital have determined the complex structure of Parkinson’s disease-related proteins LRRK2 and Rab29, revealing how they work synergistically to cause the disease. The structures provide an atomic-scale map to trace how different mutations affect function within this complex, with implicatio...
Researchers at Tokyo Medical and Dental University have developed a novel method to characterize protein-binding interfaces, revealing complex protein geometries. The technique was validated by studying the homophilic interaction between LAMP2A molecules, which form a trimeric structure in mammalian cells.
Scientists discovered that a bacterial defense system can induce self-destruction when bound to specific proteins, marking a new phenomenon in enzymatic function. This switch allows the bacteria to eliminate a vital molecule needed for survival, ultimately leading to their demise.
A study published in EMBO Reports reveals that microautophagy is crucial for repairing damaged lysosomes, which helps prevent cellular aging. The researchers identified key regulators of this process, including STK38 and GABARAPs, and found that their depletion increases the rate of senescent cells and shortens lifespan in C. elegans.
Researchers developed an innovative bioengineering approach using genetically modified bacteria to incorporate protein cages around protein crystals. This method efficiently produces highly customized protein complexes for specialized applications. The resulting crystals have a core-shell structure with a cubic PhC core covered in five...
A Berlin researcher is investigating biophysical phenomena relevant to brain diseases through a €1.5M European Research Council grant. The goal is to understand the behavior of aberrant protein inclusions in neurodegenerative diseases.
A protein complex has been identified as crucial for regulating Casparian strip formation and lignin polymerization in plants, leading to improved water and nutrient utilization. The discovery provides a new target for biotechnological development of crop varieties.
Researchers discovered that intrinsically disordered regions (IDRs) in proteins play a critical role in chromatin regulation and gene expression. IDRs form droplets called condensates that separate from surrounding fluid, allowing proteins to congregate and carry out cellular activities.
Rice University scientists developed a tiny CRISPR-Cas13 system to shred viruses by targeting RNA. The system's unique mechanism and three-dimensional structure were mapped using cryo-electron microscopy, allowing researchers to engineer it for improved precision and specificity.
A new study found that whole milk plain yogurt prevented almost all of the volatile compounds responsible for garlic's pungent scent. The researchers suggest high-protein foods may one day be formulated specifically to fight garlic breath. Yogurt's proteins were effective at trapping garlic odors, making it a potential solution.
Researchers at EMBL Grenoble have obtained the first structure of p38α being activated by MKK6, opening up new directions for developing drugs to stop cytokine storms. The inflammatory response is triggered by a series of kinases, and inactivating p38α could prevent inflammation from occurring.
Researchers from Shinshu University identified citrullination as a key mechanism in lung cancer metastasis. A novel CitFbg peptide was developed to block metastatic cell homing and reduce the risk of cancer spread.
A Cornell research team has developed a new way to design complex microscale machines, one that draws inspiration from the operation of proteins and hummingbird beaks. The lead author is Itay Griniasty, who led the development of an algorithm to simplify the search for magnetic patterns that spur the desired bifurcation.
A team of researchers developed a computational simulation that explains key mechanism of DNA segregation, providing new insights into the distribution of genetic information during bacterial cell division. The study reveals fundamental biochemical principles relevant to synthetic biology and medical applications.
A recent study discovered the complex circadian clock mechanisms in soil bacteria Bacillus subtilis, regulating multiple genes and behaviors. The findings have significant implications for industrial applications, human health, and plant science.
Researchers found that BUB1 protein regulates EGFR signaling by reducing receptor internalization, which may lead to new therapeutic interventions for EGFR-driven cancers. The study also showed that BUB1 impacts receptor recycling and degradation, affecting signaling amplitude and duration.
Researchers at Tokyo Metropolitan University have discovered that 5-aminolevulinic acid can selectively boost Complex II and IV to counteract Complex I deficiency, a common cause of mitochondrial disorders. This finding offers new hope for the development of treatments for debilitating conditions such as MELAS syndrome.
A team at Penn State has identified a protein called calcium-dependent protein kinase 32 (CPK32) that modifies the cellular machinery responsible for producing cellulose. This new understanding could inform the design of more stable, cellulose-enriched materials for biofuels and other functions.
Researchers created artificial allosteric sites in protein complexes using computational design to regulate concerted functions. This breakthrough holds promise for industry, biology, medicine, and agriculture.
A new study reveals that the protein complex BCDX2 plays a critical role in DNA repair, suggesting mutations in this complex could lead to cancer. The research also highlights the importance of screening for mutations in people with a family history of breast and ovarian cancers.
A team of scientists has identified a key player in the coupling between early transcription termination and RNA degradation. The ARS2 protein recruits ZC3H4, which interacts with the NEXT complex to target nascent transcripts for degradation.
Researchers discover cBAF protein complex plays crucial role in controlling T cell fate during infection. The study reveals how chromatin remodeling and genetic code accessibility influence the development of cytotoxic T cells into effector and memory subtypes.
Researchers discovered a protein complex called FERRY that plays a crucial role in transporting messenger RNA in neurons. The study provided evidence of the transport of mRNA using Early Endosomes (EEs) and a novel mode of binding RNA via coiled-coil domains.
Researchers developed a novel hybrid protein complex by binding lysozyme to copper for enhanced reactive oxygen species (ROS) removal. The CuST@lysozyme hybrid protein showed high SOD activity and stability in biological fluids, paving the way for its therapeutic applications.
Scientists have rebuilt the complex nanomachine in the laboratory that starts autophagy, revealing its sophisticated cellular mechanism. The study's findings could help develop future drugs to treat diseases based on a faulty autophagy process.
Scientists at Scripps Research have determined the structure of the critical protein complex that lets Lassa virus infect human cells, identifying new antibodies and vaccine targets. The research also found a high level of conservation across different lineages of the virus, paving the way for more effective vaccines and treatments.
A team of researchers used artificial intelligence to create a 3D model of the Commander complex, a bundle of proteins that transport proteins in cells. This has helped understand how mutations cause disease, including Alzheimer's and heart disease.
A new glycosidic-bond-based mass-spectrometry-cleavable cross-linker has been developed to improve data analysis throughput and identification accuracy of cross-linking information. This technique enables in-vivo cross-linking of protein complexes in live cells, achieving large-scale and precise analysis of 1,453 proteins.
Researchers found that Foxp2 mutations disrupt the formation of dendrites and neuronal synapses in brain regions involved in speech production. Mice with these mutations showed impairments in producing high-frequency sounds necessary for communication.
Scripps Research scientists develop a new strategy to identify small molecules that can alter protein function, offering a promising path for discovering targeted cancer drugs. By comparing how mirror image versions of small molecules impact clusters of proteins, they identified potential new drug targets such as MY-1B and EV-96.