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A KAIST-Seoul National University Hospital research team develops a computational workflow that predicts metabolites and metabolic pathways associated with somatic mutations in cancers

A KAIST-Seoul National University Hospital research team has developed a computational workflow that predicts metabolites and metabolic pathways associated with somatic mutations in cancers. The workflow uses genome-scale metabolic models and mutation data to identify altered metabolic pathways that contribute to cancer progression.

SourceThe Korea Advanced Institute of Science and Technology (KAIST)·JournalGenome Biology·TypeComputational simulation/modeling·DateMar 18, 2024

Deciphering molecular mysteries: new insights into metabolites that control aging and disease

Researchers at the Boyce Thompson Institute discovered a novel family of metabolites called acylspermidines that are linked to sirtuin activity. These compounds were found to influence lifespan in C. elegans and cell proliferation in mammals, providing new insights into the physiological functions of spermidine and sirtuins.

SourceBoyce Thompson Institute·JournalNature Chemical Biology·TypeExperimental study·DateJan 2, 2024

One of the keys to healthy sleep and blood sugar has been found

Researchers from Osaka University have discovered a link between the rare D-form of the amino acid alanine and the circadian clock's influence on glucose metabolism in the kidney. The study found that D-alanine regulates gluconeogenesis, a process that creates new glucose to maintain energy levels, and is mediated by the protein Cry2.

SourceOsaka University·JournalKidney360·TypeExperimental study·DateDec 21, 2023

More than skin-deep

A team of Kyoto University researchers found that macrophages produce granulomas through a hyperactive metabolic pathway called the pentose phosphate pathway. Inhibition of this pathway showed therapeutic efficacy in reducing granuloma formation in vitro and in mouse tissue models.

SourceKyoto University·JournalJournal of Clinical Investigation·TypeExperimental study·DateDec 6, 2023

Novel concept of ‘metabolic elasticity’ offers new screening strategy for metabolic health; provides potential means of curbing metabolic decline in ageing and obesity

Researchers developed a new framework to measure metabolic health, introducing the concept of metabolic elasticity. The study found that metabolic elasticity declines with age and obesity, affecting the body's ability to adapt to changing energy needs.

SourceDuke-NUS Medical School·JournalCell Metabolism·TypeExperimental study·DateNov 2, 2023

Nature is inventive - the same substance is produced differently by plants

Researchers have found that benzoxazinoids, a special plant defense compound, evolved independently in distantly related plant families. The study used two species, golden dead-nettle and zebra plant, to elucidate the metabolic pathway of these compounds, revealing unexpected diversity in enzymes performing the same reactions.

SourceMax Planck Institute for Chemical Ecology·JournalProceedings of the National Academy of Sciences·TypeExperimental study·DateOct 9, 2023

Graphene oxide reduces the toxicity of Alzheimer’s proteins

Researchers at Chalmers University of Technology have shown that graphene oxide nanoflakes can reduce the accumulation of misfolded amyloid peptides in yeast cells, which are similar to human neurons affected by Alzheimer's disease. This suggests that graphene oxide may hold great potential for treating neurodegenerative diseases.

SourceChalmers University of Technology·JournalAdvanced Functional Materials·TypeExperimental study·DateOct 4, 2023

Enlighten me

Researchers at Kyoto University discovered that liverwort Marchantia polymorpha uses gibberellin precursors to produce a signaling molecule aiding survival under shaded conditions. This metabolic pathway inheritance provides insight into the evolution of plant hormone responses.

SourceKyoto University·JournalThe Plant Cell·TypeExperimental study·DateOct 3, 2023

Cell biology: How cellular powerhouses call for help when under stress

A team of researchers from Goethe University Frankfurt has discovered a central switch point in the mitochondrial signaling chain under misfolding stress. The mitochondria send two chemical signals to the cell when protein misfolding stress occurs, triggering a protective response that reduces misfolded proteins and stabilizes membranes.

SourceGoethe University Frankfurt·JournalNature·TypeExperimental study·DateJul 28, 2023

Comprehensive analysis of single plant cells provides new insights into natural product biosynthesis

Researchers used single-cell multi-omics to study specialized cell types involved in producing medically relevant plant compounds. The analyses revealed that three distinct cell types are organized in a specific biosynthetic pathway for vinblastine, a key alkaloid compound with anti-cancer properties.

SourceMax Planck Institute for Chemical Ecology·JournalNature Chemical Biology·TypeExperimental study·DateMay 15, 2023

With formic acid towards CO2 neutrality

Researchers develop a new method for fixing carbon dioxide using formic acid, which can replace conventional chemical manufacturing processes with carbon-neutral biological methods. The process produces formaldehyde, a non-toxic substance that can be fed into metabolic pathways to create valuable substances.

SourceMax-Planck-Gesellschaft·JournalNature Communications·TypeExperimental study·DateMay 15, 2023

Honey bee metabolic pathway discovered with strong connections to winter colony losses

A study by US Department of Agriculture scientists has identified a specific metabolic pathway controlling energy and immune response in honey bees under cold stress. This pathway is strongly connected to large overwintering colony losses, making it a promising avenue for new therapeutic strategies to mitigate these losses.

SourceUS Department of Agriculture - Agricultural Research Service·JournalJournal of Advanced Research·TypeExperimental study·DateJan 19, 2023

Three new biomarkers identified to detect consumption of emerging synthetic cannabinoid

A team of scientists has identified three new biomarkers for detecting the consumption of emerging synthetic cannabinoids like OXIZID. These biomarkers will facilitate work by drug enforcement agencies worldwide in monitoring OXIZID abuse, enabling more accurate identification of abusers and potentially preventing overdoses.

SourceNational University of Singapore·JournalClinical Chemistry·TypeExperimental study·DateNov 30, 2022

New insights into how serotonin regulates behavior

New research by Frank Schroeder's team reveals two parallel biosynthetic pathways for serotonin production in C. elegans, challenging the long-held assumption that serotonin is made and quickly broken down. The findings suggest new therapeutic targets for treating anxiety, depression, and eating disorders.

SourceBoyce Thompson Institute·JournalNature Chemical Biology·TypeExperimental study·DateOct 13, 2022

A refined microbiome “fingerprint” method tracks sub-strain variants of a single gut microbe strain

Researchers develop a refined microbiome fingerprint method to track sub-strain variations in key gut bacteria species. The study found differences in sub-strain dynamics between healthy individuals and hospitalized COVID-19 patients, suggesting an impending shift in the dominant strains of the gut microbiome.

SourceUniversity of Alabama at Birmingham·JournalScientific Reports·TypeData/statistical analysis·DateApr 27, 2022

Light-powered microbes are super-producing chemical factories

Researchers from Osaka University engineered microorganisms to use light as an external energy source, accelerating biomanufacturing of target compounds without disrupting the host microorganism's natural metabolism. This approach has the potential to increase efficiency and reduce carbon emissions in bioprocesses.

SourceOsaka University·JournalMetabolic Engineering·TypeExperimental study·DateApr 11, 2022

More ancestral enzyme

The study reports the crystal structures of aconitase X enzymes from bacteria and archaea, providing novel insights into their catalytic mechanisms. The findings suggest that ancestral active sites in aconitase superfamily are conserved across different species.

SourceEhime University·JournalCommunications Biology·DateJul 8, 2021

'Big data' drills down into metabolic details

A new computational method, CORDA, models tissue-specific metabolic pathways by assigning a cost to reactions without experimental data. Researchers found key differences in metabolic similarities between healthy and cancerous tissues, including up-regulation of folate metabolism.

SourceRice University·JournalPLOS Computational Biology·DateMar 9, 2016

Cells exercise suboptimal strategy to survive

A new study published in BMC Systems Biology uses computational method corsoFBA to model cellular metabolism and discover how organisms adapt to changing environments. The researchers, led by Amina Qutub, aim to develop new treatments for diseases such as stroke and cancer.

SourceRice University·JournalBMC Systems Biology·DateApr 6, 2015

Starting a new metabolic path

Researchers at JBEI have developed a technique called targeted proteomics that enables the rapid identification and quantification of specific proteins in cells or microbes. This technique can help identify bottlenecks in metabolic pathways, leading to improved efficiency and productivity in biofuel and therapeutic drug production.

SourceDOE/Lawrence Berkeley National Laboratory·JournalMetabolic Engineering·DateApr 20, 2011