Articles tagged with Phylogenetic Analysis
Comprehensive exploration of living organisms, biological systems, and life processes across all scales from molecules to ecosystems. Encompasses cutting-edge research in biology, genetics, molecular biology, ecology, biochemistry, microbiology, botany, zoology, evolutionary biology, genomics, and biotechnology. Investigates cellular mechanisms, organism development, genetic inheritance, biodiversity conservation, metabolic processes, protein synthesis, DNA sequencing, CRISPR gene editing, stem cell research, and the fundamental principles governing all forms of life on Earth.
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Comprehensive investigation of human society, behavior, relationships, and social structures through systematic research and analysis. Encompasses psychology, sociology, anthropology, economics, political science, linguistics, education, demography, communications, and social research methodologies. Examines human cognition, social interactions, cultural phenomena, economic systems, political institutions, language and communication, educational processes, population dynamics, and the complex social, cultural, economic, and political forces shaping human societies, communities, and civilizations throughout history and across the contemporary world.
Fundamental study of the non-living natural world, matter, energy, and physical phenomena governing the universe. Encompasses physics, chemistry, earth sciences, atmospheric sciences, oceanography, materials science, and the investigation of physical laws, chemical reactions, geological processes, climate systems, and planetary dynamics. Explores everything from subatomic particles and quantum mechanics to planetary systems and cosmic phenomena, including energy transformations, molecular interactions, elemental properties, weather patterns, tectonic activity, and the fundamental forces and principles underlying the physical nature of reality.
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Study of the practice, culture, infrastructure, and social dimensions of science itself. Addresses how science is conducted, organized, communicated, and integrated into society. Encompasses research funding mechanisms, scientific publishing systems, peer review processes, academic ethics, science policy, research institutions, scientific collaboration networks, science education, career development, research programs, scientific methods, science communication, and the sociology of scientific discovery. Examines the human, institutional, and cultural aspects of scientific enterprise, knowledge production, and the translation of research into societal benefit.
Comprehensive study of the universe beyond Earth, encompassing celestial objects, cosmic phenomena, and space exploration. Includes astronomy, astrophysics, planetary science, cosmology, space physics, astrobiology, and space technology. Investigates stars, galaxies, planets, moons, asteroids, comets, black holes, nebulae, exoplanets, dark matter, dark energy, cosmic microwave background, stellar evolution, planetary formation, space weather, solar system dynamics, the search for extraterrestrial life, and humanity's efforts to explore, understand, and unlock the mysteries of the cosmos through observation, theory, and space missions.
Comprehensive examination of tools, techniques, methodologies, and approaches used across scientific disciplines to conduct research, collect data, and analyze results. Encompasses experimental procedures, analytical methods, measurement techniques, instrumentation, imaging technologies, spectroscopic methods, laboratory protocols, observational studies, statistical analysis, computational methods, data visualization, quality control, and methodological innovations. Addresses the practical techniques and theoretical frameworks enabling scientists to investigate phenomena, test hypotheses, gather evidence, ensure reproducibility, and generate reliable knowledge through systematic, rigorous investigation across all areas of scientific inquiry.
Study of abstract structures, patterns, quantities, relationships, and logical reasoning through pure and applied mathematical disciplines. Encompasses algebra, calculus, geometry, topology, number theory, analysis, discrete mathematics, mathematical logic, set theory, probability, statistics, and computational mathematics. Investigates mathematical structures, theorems, proofs, algorithms, functions, equations, and the rigorous logical frameworks underlying quantitative reasoning. Provides the foundational language and tools for all scientific fields, enabling precise description of natural phenomena, modeling of complex systems, and the development of technologies across physics, engineering, computer science, economics, and all quantitative sciences.
The discovery of Foskeia pelendonum, a tiny ornithopod dinosaur, overturns global ideas on dinosaur evolution. The species' small size belies its specialized dentition and shifting posture during growth.
Researchers found that the green-flowered Aeschynanthus acuminatus evolved on the mainland, not in Taiwan, and adapted to shorter-beaked birds. This contradicts the Grant-Stebbins model of plant evolution, which predicted the species would evolve in Taiwan with new pollinators.
The latest research on water striders, a true bug family, sheds light on their evolutionary history, revealing that most lineages originated up to 50 million years ago. The study, led by Dr. Michael Raupach, used genome analysis to reconstruct the family tree and identify key drivers of biodiversity.
Researchers at the Howard Hughes Medical Institute used a new method to determine which animal evolved first, finding support for the sponge hypothesis. The study suggests that sponges are rooted at the base of the animal tree of life, contrary to previous theories suggesting comb jelly ancestors.
Researchers at EMBL-EBI developed SPRTA, an interpretable and efficient way to score the reliability of each branch in a phylogenetic tree. This method enables fast and reliable understanding of virus strain evolution, informing better decisions during outbreaks.
Researchers at OIST develop a new method harnessing 'jumping genes' to recreate the termite tree of life, providing a template for solving ancient evolutionary mysteries. The study achieves similar accuracy to trees built from thousands of protein marker sequence alignments.
A new study reveals rising rates of invasive SDSE infections across Australia, particularly among older Australians and those from remote regions. The research highlights disparities in health outcomes between regions and populations, emphasizing the need for improved surveillance and prevention strategies.
Researchers mapped bacterial growth in 195 environments, revealing consistent links between growth patterns and ecological traits like habitat and distribution. The study's findings suggest that controlled experiments can uncover mechanisms of ecological and evolutionary adaptation.
A new study explores why certain parts of reptiles, such as lizard jaws and snake vertebrae, are more likely to be preserved as fossils. The research reveals that physical characteristics like bone density and body size, as well as the environment in which the animals lived and died, are major predictors of fossil completeness.
Researchers found that conifer resin contains a mix of ancient and recent diterpenes, which may aid in combating bark beetles. The team's genetic analysis revealed that some diterpenes originated 300 million years ago, while others developed more recently and independently in different tree species.
Researchers analyzed seeds from a now-extinct plant population on Nishinoshima, tracing its lineage to nearby Chichijima island. The study found distinct genetic traits and a strong founder's effect due to limited seed dispersal opportunities.
Researchers have uncovered microbial DNA in woolly and steppe mammoth remains dating back over 1 million years, identifying bacteria possibly causing disease in mammoths. The findings provide an unprecedented glimpse into the microbiomes of extinct megafauna.
A tiny fossil of a sea creature from over half a billion years ago sheds light on the evolution of arthropods, revealing a brain similar to that of living crustaceans. The discovery suggests that the split between the two largest groups of arthropods was more nuanced and complicated than previously thought.
A new analysis of a 500 million-year-old fossil suggests that arachnids, including spiders and scorpions, evolved in the ocean before adapting to land. The discovery was made by studying the brain and nervous system of an ancient marine arthropod called Mollisonia symmetrica.
A study comparing two species of transparent worms reveals that gene expression patterns tend to remain unchanged in basic cell types, while diverging more rapidly in specialized cells involved in sensing and responding to the environment. The findings provide new insights into the pace of evolution in organisms.
A New Zealand study supports the theory of punctuated equilibrium, which suggests that evolution occurs in short, intense periods followed by long stretches of stability. The research confirms rapid evolutionary change coincides with species branching, potentially leading to its wider acceptance.
A study by Kobe University reveals that plants reproducing solely through self-pollination likely arose from populations with extremely low genetic diversity. The research found that these species are highly successful at producing fruit and may have an evolutionary edge over outcrossing, raising questions about their long-term viability.
The discovery of a 355-million-year-old sandstone slab in Australia reveals the earliest clawed footprints ever found, challenging the long-held timeline of tetrapod evolution. The findings suggest that reptiles evolved significantly earlier than previously thought, impacting the entire evolutionary history of amniotes.
Researchers have discovered that secretoglobins, a protein family thought to be exclusive to mammals, are also found in turtles, crocodilians, lizards, and birds. The study suggests that these proteins evolved earlier than dinosaurs and share a basic function not yet discovered.
A new species of killifish, Nothobranchius sylvaticus, has been described from an ancient forest in Kenya, which is also the first known endemic killifish to persist in a forest. The species faces a high conservation risk due to its severely restricted habitat.
A new study debunks the long-held Protura-sister hypothesis by revealing critical errors in molecular analysis. The researchers re-examined non-nucleotide sequence data and identified misinterpretations that led to the incorrect grouping of hexapod lineages.
A new computational tool, PsiPartition, simplifies genetic data analysis for evolutionary biology, allowing researchers to efficiently study species relationships. The novel method improves both computational efficiency and accuracy of phylogenetic trees.
The red milkweed beetle's genome has been sequenced, providing insights into how it safely feeds on toxic plants. The study found an apparent expansion of genes related to toxin sequestration and metabolic enzymes.
Researchers confirm 15 new species in Characidium genus, including genetic distance smaller than 2% between species with significant morphological differences. The study highlights the need for reevaluation of species classification and evolutionary history.
Researchers discovered that a 30-million-year-old feline ancestor had both brown and gray-eyed individuals, paving the way for modern felid iris color diversity. The study found a correlation between yellow eyes and round pupils, as well as an ancestral population with brown eyes only before gaining gray-eyed individuals.
A new species of extinct crocodile relative, Benggwigwishingasuchus eremicarminis, has been discovered in Nevada, USA. The species reveals that pseudosuchian archosaurs ruled the shores across the Middle Triassic globe between 247.2 and 237 million years ago.
Researchers analyzed genomes of 363 bird species and found significant variations in cryptochrome 4 gene, indicating adaptation to environmental conditions. This specialization could be related to magnetoreception in migratory birds.
A recent study by the Smithsonian has pushed back the earliest dated origin of bioluminescence in animals by nearly 300 million years, dating it to around 540 million years ago in marine invertebrates called octocorals. The ability to produce light is involved in various behaviors such as camouflage, courtship, and hunting.
Researchers describe two Jurassic mammaliaforms from China, revealing dental diversification and the emergence of middle ear ossicles. The findings support a classic example of vertebrate evolution and provide new insights into early mammalian phylogeny.
A new study led by the Smithsonian identifies five new species of soft-furred hedgehogs from Southeast Asia, using DNA analysis and physical characteristics. The two new species, Hylomys vorax and H. macarong, are endemic to the endangered Leuser ecosystem in North Sumatra and Southern Vietnam.
Researchers discovered six new species of rove beetles with unique genital shapes, including a bottle-opener like structure in one species. Climate change threatens the survival of these species due to habitat changes.
A new fossil ape named Anadoluvius turkae, discovered in Türkiye, pushes the origin of African apes and humans from Europe to Asia. The findings suggest that hominines evolved in western and central Europe before migrating to Africa.
A new species of extinct whale, Tutcetus rayanensis, has been discovered in Egypt's ancient sea, providing unprecedented insights into the life history and phylogeny of early whales. The discovery sheds light on the transition from land to sea and the evolution of whales.
Scientists from Tohoku University propose a new hypothesis explaining the emergence of endemic species on the Miyako Islands. A land area between Okinawa and Miyako existed as a transit site for biological migration, suggesting that the island chain's unique species evolved after being uplifted 400,000 years ago.
Researchers have discovered that eukaryotes, including plants, animals, and fungi, share a common ancestor among the Asgards. The team identified a newly described order called the Hodarchaeales as the closest microbial relative to all complex life forms on the tree of life.
A cutting-edge study in Mozambique found that the beta variant of SARS-CoV-2 was transmitted through regional migration from South Africa, while the delta variant entered mainly from the UK and India. The analysis also revealed that most introductions did not contribute to local spread.
Researchers have identified a new group of mitochondrial viruses confined to arbuscular mycorrhizal fungi Glomeromycotina, which may represent an ancestral lineage of mitoviruses. These large duamitoviruses possess distinct characteristics and are globally distributed in ecological niches occupied by glomeromycotinian fungi.
A study by Chinese Academy of Sciences researchers found that group-living mammals live longer than solitary ones, with a 100-fold variation in longevity among species. The team identified 31 genes and pathways linked to both social organization and lifespan.
Fossils of two near-primate species, Ignacius mckennai and I. dawsonae, dating back 52 million years have been discovered on Ellesmere Island in layers linked with the early Eocene epoch. The findings suggest that these Arctic-dwelling primates evolved more robust teeth and jaws to cope with tougher food sources during winter months.
Researchers have discovered that ancient crocodilian hemoglobin required 21 interconnected mutations to develop its hyper-efficient oxygen-binding properties. This complexity, not found in other vertebrates, enabled crocodilians to exploit their onboard oxygen stores for extended periods underwater.
A new Legionella species, Legionella bononiensis, has been identified in a hotel facility in northern Italy. The discovery was made by researchers from the University of Bologna using genetic sequencing and mass spectroscopy techniques.
A study in Serrana, Brazil showed that mass vaccination reduced severe cases and death rates even while gamma and delta variants were circulating. Vaccination coverage reached 80% of the target population.
A new egg species, Ramoprismatoolithus okurai, has been identified from Early Cretaceous fossil eggshell fragments found in Japan. The analysis of the eggshell fragments and impressions suggests an affinity with the troodontids, a group of small non-avian theropod dinosaurs.
A study explores the link between shark nose shape, size, and sensitivity of smell. The researchers found that more lamellae in rosettes with an elongated shape are associated with increased odor sensitivity.
Scientists have made significant progress in understanding fungal diversity by identifying a new species, rediscovering an existing one, and reclassifying another. The study's findings have implications for fields like cell biology, genetic engineering, medicine, and environmental science.
A study published by the University of Zurich has found that vocal communication in vertebrates has a common and ancient evolutionary origin, dating back to around 407 million years ago. The research used vocal recordings and contextual behavioral information from 53 species across four major clades of land vertebrates.
The Sixty-third Supplement to the Check-list of North American Birds updates bird classifications, including meadowlark species splits, hummingbird recognitions, kite separations, and the addition of a giant-petrel. New subspecies are also recognized for some bird species, reflecting advances in genetic analysis.
Researchers discovered a bacterial enzyme that enabled the evolution of longhorned beetles to break down complex plant cell wall components. The study found that gene duplication played a key role in increasing the diversity and specificity of these enzymes.
New research challenges centuries-old scholarship on animal classification by morphology, instead favoring molecular data for a better fit with geographical distribution. Convergent evolution is found to be widespread and often misleading, with famous examples such as flight in birds, bats, and insects
Two new species of Amazonian fish have been discovered and described by Smithsonian researcher Murilo Pastana, one with vibrant red-orange fins and another that is technically a miniature fish. The species are at risk of extinction due to deforestation in the region where they inhabit.
Researchers discover that type 1 TPCs encode SV channels in plant vacuoles, while type 2 TPCs likely encode distinct ion channels. This study provides functional and evolutionary insights into the TPC family in plants, shedding light on their role in plant growth and defence mechanisms.
A large-scale international study, led by Tel Aviv University's Dr. Omri Bronstein, found that many species of echinoids, including sea urchins, survived a mass extinction event 50 million years earlier than thought. The findings suggest that estimates of evolutionary timelines may err by tens of millions of years.
A genome-scale analysis of echinoids reveals modern species emerged 300 million years ago, survived mass extinction, and diversified rapidly. The findings also suggest sand dollars and sea biscuits originated earlier than thought, with possible fossil record gaps.
A newly described softshell turtle, Hutchemys walkerorum, lived in North Dakota 66.5 million years ago, surviving the end-Cretaceous mass extinction alongside Tyrannosaurus rex and Triceratops. The find sheds light on the evolution of softshell turtles during this period.
A comprehensive analysis of brain cellular composition across amniotes shows that mammals and birds have dramatically increased neuron numbers in the telencephalon and cerebellum, associated with higher cognition. The study suggests that only a handful of unique evolutionary events augmented brain processing power in these groups.
Researchers discovered two dominant strategies among flatworms: reciprocal males receive more resources, while hypodermic mated species invest heavily in female organs. Self-fertilization in these species increases with hypodermic mating, suggesting a common evolutionary principle between plants and worms.
The Omicron variant diverged from previous variants through adaptive evolution, with more than 30 mutations in its spike protein. The team found evidence of positive natural selection and partial immune evasion contributing to its rapid spread.
Researchers used new technology to study Grapevine Pinot gris virus propagation in a specific vineyard in France. The study found that over 75% of tested plants became infected between 2014 and 2015, with only a marginal number of grapevines testing positive during the remaining five years.
A new study provides a detailed timeline of mammal evolution, confirming that modern placental mammal groups postdate the K-Pg extinction. The researchers used a novel computational approach to analyse a large genomic dataset and answer a long-standing question about mammal origins.
A global dataset of over 200,000 plant species shows that human activity is the biggest driver of homogenization of plant communities. Non-native invasive plants naturalized by humans are the strongest contributor to biotic homogenization.