Articles tagged with Genome Sequencing
Researchers will identify and track SARS-CoV-2 variants using genomic sequence analyses. The project aims to understand the emergence and spread of the virus in West Virginia, helping public health officials prepare for future outbreaks.
A new study found that whole genome sequencing increases the diagnosis of rare genetic disorders by 31%, shortening the diagnostic odyssey for affected families. This approach provides opportunities for future research and can identify non-mitochondrial disorders with specific treatments.
Researchers have sequenced the quillwort genome, uncovering unique genetic mechanisms regulating CAM photosynthesis in these aquatic plants. The study found differences in phosphoenolpyruvate carboxylase function between quillworts and terrestrial plants.
An international team of researchers identified genes associated with plant survival in the Atacama Desert, a harsh environment in Chile. These findings may help scientists breed crops that can thrive in increasingly dry climates and mitigate the effects of climate change.
Mangroves have evolved a remarkable resistance to stress in harsh ocean environments. Researchers decoded the genome of Bruguiera gymnorhiza and found that it regulates genes to cope with stress, using adaptive epigenetic changes to survive.
Researchers developed a computational method to estimate new infection rates from genomic sequences, revealing decreased case detection in Europe during summer 2020 due to relaxed testing criteria. The study also highlights the effects of non-pharmaceutical interventions on COVID-19 spread.
Scientists have developed a technique to sequence individual malaria parasites' genomes, allowing for the detection of new mutations. These mutations are often targeting a gene family controlling transcription in malaria, suggesting potential avenues for developing more effective treatments and vaccines.
Researchers developed an integrated framework combining single-cell and metagenomics to characterize microbes. The approach showed higher accuracy and precise binning, revealing more bacterial genera and intra-species diversity.
A new research center will use genomic data and socioeconomic factors to better predict health outcomes in individuals of diverse ancestry. The center aims to develop computational tools to combine large datasets and analyze them for consistent relationships among admixed populations.
Researchers found that wild and hatchery coho salmon demonstrate different genetic markers for negative assortment, a common finding in mating. They are now trying to emulate the natural mating of coho salmon in a hatchery environment using genetic profile information.
The University of Maryland Center for Environmental Science has sequenced the genome of the blue crab, revealing approximately 24,000 genes and a genome length that is one third of the human genome. This breakthrough will aid in fisheries policies, aquaculture, and potentially track food source origins.
A study analyzed genetic material from 86 discordant couples infected by SARS-CoV-2 and found associations between certain genetic variants and efficient activation of natural killer cells. These cells play a crucial role in the innate immune response, destroying infected cells to prevent disease development.
Researchers found that ancient Siberian human populations interacted with outside dog populations at least 2,000 years ago, suggesting dogs were traded as goods. The study reveals that modern dog breeds like Samoyeds and Siberian Huskies maintain significant ancestry from a lineage established prior to 9,500 years ago.
A medieval Spanish individual, known as the 'Segorbe Giant,' has been analyzed using ancient DNA. The research found that he had a mix of North African and local Spanish ancestry, suggesting a complex history of migration and intermixing. This study sheds light on a dark event in medieval Spain's past.
A study by University of Utah biologists discovered a mutation in the ROR2 gene is linked to short beak length in domestic pigeons. This mutation also underlies the human disorder Robinow syndrome, which shares striking facial features with the pigeon phenotype.
Researchers analyzed genome sequences and mobile phone data to track Covid-19 spread in Bangladesh. A three-day window between lockdown announcements and enforcement led to increased infections as citizens traveled to other areas.
Researchers at OIST and Tokyo University of Marine Science and Technology have developed a genetic resource for the kuruma shrimp, a species prone to white spot disease. The genome sequence has identified genes related to disease resistance, which could be used to establish a disease-resistant line of shrimp.
A study published in PLOS Genetics found that smoking-related DNA methylation patterns explain around 1/5 of the variation in body mass index between individuals. The study analyzed genomic sequence data from over 390,000 participants and found that genetics accounted for 50% of the variation in BMI.
Researchers used functional genomics to identify key genes involved in inducing callus from immature maize embryos, overcoming a major roadblock in plant breeding. The study found that nearly 30% of predicted A188 genes were structurally different from other maize lines, accounting for high protein divergence and phenotypic variations.
The world's largest repository of raw genomic sequences is missing critical data necessary for monitoring and preserving biodiversity. Only 14% of archived datasets contain information about when and where organisms were sampled, highlighting the need for community standards to preserve metadata.
Despite 10,000 years of inbreeding, the kākāpō genome sequencing reveals that the species has lost potentially deleterious mutations and now carries fewer harmful mutations than extinct mainland populations. This finding suggests that natural selection may have facilitated genetic purging in small populations.
Researchers sequenced the genomes of an ancient date palm leaf and found evidence of hybridization with wild relatives. The study sheds light on the evolution of date palms in North Africa, showing that genetic material from another species was present 2,200 years ago.
Researchers discovered azole-resistant Aspergillus fumigatus strains isolated from a tulip bulb have genetic recombination and resistance to multiple fungicide classes. Plant bulbs serve as an ideal niche for the pathogens to evolve their resistance, posing a global health threat.
The study provides a high-quality genome sequence of Aristolochia fimbriata, shedding light on angiosperm evolution, floral development, and chemical biosynthesis. The researchers identified two overlooked whole-genome duplications in Piperales and clarified the time of previously reported WGDs in Magnoliales and Laurales.
Research reveals cichlids exhibit highly dynamic sex chromosomes, transitioning between XY and ZW systems. Genome analysis identified over 70 species with distinct sex-determining genes.
A virulent Salmonella Enteritidis strain has been sequenced from two consecutive poultry flocks in North Carolina State University. The strain, SE_TAU19, exhibits seven antimicrobial resistance genes and 120 virulence genes, posing a threat to human health. Genome sequencing provides valuable data for tracing outbreaks and preventing f...
Scientists have sequenced the Indian wolf genome, revealing it to be one of the world's most endangered and evolutionarily distinct populations. The study suggests that Indian wolves may represent the most ancient surviving lineage of wolves.
A study published by the European Society of Human Genetics found that genetic testing can identify the cause of childhood epilepsy in half of those studied, allowing for tailored treatments. This breakthrough discovery has the potential to improve treatment possibilities and avoid unnecessary procedures.
Researchers sequenced the bowfin genome to investigate its unique combination of ancestral and advanced features. The study found unexpected insights into diverse aspects of bowfin biology, including the absence of key genes in its pectoral fin.
A reservoir of genes allowing sorghum to adapt to environmental stresses has been identified from 13 contrasting genomes. This genetic diversity is valuable for breeders, enabling them to improve crop yield and resilience. The analysis, led by the University of Queensland, provides unprecedented insights into the genome's dynamic nature.
A recent study from University of Cambridge and Addenbrooke's Hospital found that most patients infected with COVID-19 in hospitals contracted it from other patients rather than healthcare workers. The research highlights the importance of regular screening for asymptomatic patients and proper use of face masks.
Research at Washington University in St. Louis reveals that white clover's chemical defense against insect pests comes from both of its parental species, not just one as previously thought. The plant's ecological success can be attributed to this cyanogenesis process.
Researchers completed the first genetic sequencing of a Brazilian snake's genome, revealing that most toxin genes likely arose from existing functions in ancestral species. The study identified markers for comparing toxin genes with non-toxic 'ancestral' genes, shedding light on the evolution of venom production.
Researchers found Philippine Negrito ethnic group, Ayta Magbukon, possess the highest level of Denisovan ancestry in the world. Their Denisovan DNA is up to 46% greater than that of Australians and Papuans.
A new collection of corn genomes provides a detailed understanding of the genetic diversity and adaptability of corn plants. Researchers have mapped the first corn genome in 2009 and filled in gaps since, revealing how the corn genome was shuffled over time.
A new study published in Cell Reports Medicine reveals the origins of a 2012 Bundibugyo virus disease outbreak in the Democratic Republic of Congo. The analysis, conducted by an international team, used high-throughput sequencing to identify multiple virus 'spillover' events that contributed to the outbreak. This research highlights th...
Researchers developed a machine learning tool, BoostDM, that evaluates the potential contribution of mutations in genes to cancer development. The tool helps understand how tumors are caused at the molecular level and can facilitate medical decisions regarding therapy.
The NIH is awarding $80 million to the Mendelian Genomics Research Consortium to develop new methods and approaches for identifying genetic causes of single-gene diseases. The consortium aims to significantly increase the number of Mendelian disorders with known genetic causes.
An international team has developed a method to analyze ancient DNA in museum specimens, allowing for their placement on the evolutionary timeline. The technique enabled researchers to trace the evolutionary history of several species over tens of millions of years.
Researchers identified genetic markers to control fatty acid content in sunflower oil, a key source of vegetable fats. The study used genomic selection to create new crop varieties with tailored properties suitable for different uses.
A Belgian case report documents a 90-year-old woman's simultaneous infection with two different SARS-CoV-2 variants of concern: B.1.1.7 (UK) and B.1.351 (South Africa). The patient developed rapidly worsening respiratory symptoms, leading to death. This is one of the first documented cases of co-infection with VOCs.
A new study evaluated eight miRNA applications to simplify the process of discovery and characterization. Two programs, sRNAbench and miRExpress, stood out for their high sensitivity and low run times, making them suitable for use in plants with varying genome sizes.
Researchers study rare warbler hybrid with mismatched color patterns to disentangle genetic drivers of traits usually inherited together. The team identifies new location in genome linked to black face mask and confirms previously identified region for black throat patch.
RAMBO, a new method, cuts indexing times for large DNA databases from weeks to hours and search times from hours to seconds. The researchers used a data structure that has a significantly faster query time than state-of-the-art genome indexing methods.
Researchers at UIC are expanding testing for vulnerable communities, performing genomic sequencing on samples to identify emerging SARS-CoV-2 strains. This helps gather info on variant dynamics and human immune responses, aiding public health surveillance.
A new UC Davis study confirms that SARS-CoV-2 contamination on hospital surfaces is unlikely to be infectious. The research used genome sequencing to detect the virus on surfaces and found that only a small percentage of samples were positive, suggesting that improved cleaning protocols may have reduced transmission.
Researchers have sequenced the nuclear genome of the koala lemur, a giant primate that went extinct in Madagascar around 500-2,000 years ago. The findings reveal new insights into its position on the primate family tree and how it interacted with its environment, which could help understand past lemur extinctions.
Researchers at Karolinska Institutet have developed a cost-effective method for detecting new coronavirus variants. The COVseq technology uses multiplex PCR and pooling to sequence thousands of viral genomes per week, making it an affordable solution for global surveillance.
Scientists assembled a high-quality genome of a European olive species, identifying genes involved in oleuropein biosynthesis. The study revealed 202 genes related to oleuropein, twice as many as previously known, and found olives genetically closest to the oleaster plant.
A decade of ancient genome analysis has shown that early humans were resilient and capable, exploring new environments with no prior knowledge. This discovery challenges previous theories on human behavior and highlights the importance of genomic evidence in understanding our history.
A new study reveals that wastewater sequencing can detect emerging SARS-CoV-2 variants like B.1.1.7 up to 8 weeks before they become prevalent in clinical cases. This early warning system provides a more accurate picture of virus circulation among humans, including asymptomatic individuals.
A new study suggests that excluding individuals with harmful mutations and selecting those from multiple source populations can improve the success of translocation programs for threatened species. Computer simulations show that this approach can minimize inbreeding depression and ensure population survival.
Researchers from University of British Columbia and Strategic Salmon Health Initiative found Piscine orthoreovirus (PRV) originating from Atlantic salmon farms spreading to wild Pacific salmon through open-net farming. The study suggests a link between PRV transmission and increased disease severity in Chinook salmon.
The conference aims to share experience in developing and applying bioinformatics algorithms, with topics including sequencing technologies, molecular sequence analysis, and genome assembly. Selected abstracts will be published as part of the BiATA 2021 BMC Bioinformatics supplement.
The Alvis tool helps bioinformaticians analyze DNA sequence data and reference genome databases for more accurate assembly results. It detects chimeric sequences, which can affect data accuracy, and produces efficient vector images for human interpretation.
A new technology has made it possible to quickly sequence the entire genome of plant pathogens, enabling faster diagnosis and identification of emerging pathogens. This breakthrough has great implications for the plant pathology field, allowing for more accurate identification of difficult-to-diagnose pathogens.
A team of scientists from China has sequenced the genome of Lavandula angustifolia to understand the genetics behind its distinctive fragrance. The study revealed that gene duplications and terpenoid diversification led to the evolution of unique compounds, with potential applications in stress relief, skin conditioning, and pollination.
A new study of the California condor genome found a surprising amount of genetic diversity, indicating that the species was once more abundant. The researchers believe this diversity will aid in future conservation efforts and potentially mitigate the effects of previous inbreeding.
The Yap hadal snailfish genome contains extra genes that help stabilize proteins and DNA under high pressures, enabling it to survive in the deepest parts of the ocean. The fish has lost genes involved in vision, taste, and smell, which are likely unnecessary in its dark environment.
Michigan State University scientists are breeding heat-resistant tepary beans to address global food security concerns. By leveraging the genetics of the tepary bean, researchers aim to create beans that can thrive in challenging climates and provide essential nutrients for vulnerable populations.