Articles tagged with Viral Genetics
Researchers have identified two previously unknown circoviruses in short-finned pilot whales and orcas from the Caribbean region of the North Atlantic Ocean. The newly discovered viruses, named shofin circovirus and orcin circovirus, represent a distinct clade within the genus Circovirus.
Researchers have created a simple and efficient system to understand norovirus gene functions, enabling the development of antivirals and vaccines. The new method involves injecting norovirus cDNA clones into zebrafish embryos to generate infectious human noroviruses.
A study found that viral interactions inside cells influence antiviral resistance outcomes, while a less potent drug may ironically improve its future utility by promoting social interactions in viruses. The researchers suggest a trade-off between hitting the virus hard and allowing resistance to rise.
Researchers developed VIRE, a comprehensive viral genome database with over 1.7 million genomes from diverse ecosystems. The platform provides taxonomic information, predicted hosts, and gene functions for viruses, enabling data-driven research across various fields.
Salk Institute researchers have determined the structure of HIV's integrase protein during its newly discovered function, enabling the development of better HIV therapeutics. The study reveals a surprising flexibility in the protein's architecture, which can interact with both DNA and RNA, paving the way for new integrase-targeting drugs.
The Global Pathogen Analysis Platform (GPAP) will enable low- and middle-income countries to conduct research and surveillance of infectious diseases independently. The platform aims to prevent disease outbreaks from developing into pandemics by detecting genetic sequences of potential pathogens.
Researchers have identified a new strain of orthoreovirus in an Everglades short-tailed shrew, which is believed to be transmissible to humans. The discovery was made possible by the cat, Pepper, whose hunting prowess led to the finding of the virus.
Researchers have identified a critical step in SARS-CoV-2 viral infection: the protective role of ORF3a, which forms dense bodies surrounding the spike protein to prevent it from being cut into smaller components. This finding could lead to new therapeutic targets and vaccine development strategies.
Researchers have identified ten hemagglutinin sub-subclades with distinct antigenic variations, explaining why existing vaccines are ineffective against H9N2 AIVs. Key mutations associated with increased infectivity and pathogenicity in mammals have also been found.
Researchers have uncovered a key reason why HIV remains difficult to cure, revealing that subtle variations in the Rev-RRE axis influence viral replication and latency reactivation. Understanding this regulatory system could help develop strategies to flush out the dormant virus and eliminate it for good.
Kelsey Coffman, assistant professor at UTIA, is honored for her research on beneficial viruses in parasitoid wasps and their impact on insect interactions. She has received the Insects 2024 Young Investigator Award for her significant contributions to entomology.
A new study finds that Canada is the slowest country to report genetic information about bird flu, with an average time of 618 days. However, the same researchers note that Canada was able to improve its response to COVID-19, highlighting the need for similar urgency in addressing this public health threat.
Researchers discovered a giant virus, FloV-SA2, that encodes a ribosomal protein called eL40. This protein is crucial for translating genetic information into proteins, the building blocks of life. The study reveals new insights into how viruses interact with host cells and manipulate cellular metabolism.
The Association for Molecular Pathology has published a joint consensus report on SARS-CoV-2 genomic surveillance, outlining key considerations for next-generation sequencing methods. The report provides guidance on pre-analytical, analytical, and post-analytical aspects of NGS-based surveillance programs.
A new study finds that pathogens like Listeria and E. coli can survive on microplastics in wastewater treatment plants. These biofilms, called plastispheres, protect the pathogens from treatment processes, highlighting a challenge for safely reusing treated water.
A new lab-on-a-chip system combines optofluidics and nanopores to rapidly test for SARS-CoV-2 and Zika viruses with high accuracy. The tool, developed by UC Santa Cruz researchers, can detect viruses at extremely low concentrations and outperform PCR tests in some cases.
Researchers found that humans transfer viruses to domestic and wild animals at a rate twice that of animal-to-human transmission, highlighting the importance of monitoring viral exchange between species. This study's findings have significant implications for understanding zoonotic diseases and conservation efforts.
A new study by University of Oxford researchers found that around 1 in 200 infections may become persistent for at least 60 days. Persistent infections were also linked to Long-COVID symptoms and viral variants that went extinct in the general population.
Researchers discover HIV uses its capsid to bypass cellular defenses and transport genetic material into the cell nucleus. The 'smart' FG phase of the nuclear envelope allows the capsid to slide through, concealing the genomic payload from anti-viral sensors.
A team of scientists used ancient DNA to trace the evolution of Marek's Disease Virus, revealing genetic alterations that increased its virulence over time. The study highlights the importance of preserving archaeological remains in understanding the emergence of deadly diseases.
Researchers discuss CRISPR's limitations in generating accurate cancer models, including variable mutations and indels. Despite these challenges, the technology holds promise for cancer research due to its potential for natural selection and Darwinian evolution.
Researchers mapped mosquito's tree of life, revealing how the insects chose their hosts and evolved disease transmission. The findings suggest mosquitoes started out feeding on amphibians and later moved to other groups as they flourished.
Researchers aim to identify genetic risk factors and mechanisms underlying virus-induced asthma, using artificial intelligence-based techniques and patient-derived models. The study may lead to personalized prevention campaigns and mechanism-targeted drugs.
Researchers found that white-tailed deer are virus reservoirs, promoting ongoing mutation of the SARS-CoV-2 virus. At least 30 infections were introduced by humans, and an estimated 23.5% of deer had been infected at one time or another.
A study found that pdm09 influenza A virus has crossed from humans to swine nearly 370 times since 2009, resulting in evolutionary changes and potential for zoonotic transmission. The analysis suggests managing human infection can help prevent pig-to-human transmission.
Researchers have identified four species of coronaviruses in UK bats, including two novel ones, which are related to COVID-19 and MERS viruses. Regular monitoring of wildlife viruses is crucial for public health preparedness and biodiversity conservation.
Scientists have discovered how the PA-X protein degrades host cell RNA while leaving the virus intact, enabling it to infiltrate and replicate within cells. The findings provide new insights into how influenza A viruses evade the immune system.
The study reveals the variety of strains circulating in different regions and their association with mosquito species. Understanding these genetic differences can help predict where viral transmission may occur and inform disease severity and symptoms.
Researchers successfully demonstrate AAV vector efficacy in aged animal models, showing robust hearing rescue in mice with a mutation equivalent to a defective human gene. The study suggests that virally mediated gene therapy could potentially treat genetic hearing loss, especially for patients diagnosed at advanced age.
Researchers identified 7 key symptoms of long COVID, including heart issues and joint pain, in a study of 52,461 patients. The findings could help healthcare providers diagnose and treat the condition more effectively.
A new study reveals that smallpox originated more than 3,800 years ago, confirming historical sources and shedding light on the disease's history. The researchers used genetic analysis to trace the evolution of the virus, finding that different strains descended from a single common ancestor.
A study in Serrana, Brazil showed that mass vaccination reduced severe cases and death rates even while gamma and delta variants were circulating. Vaccination coverage reached 80% of the target population.
A new web-based tool called Taxonium is helping scientists track the evolution of SARS-CoV-2 and other viruses by analyzing massive genetic datasets. The analysis reveals that COVID-19 variants worldwide are repeatedly evolving the same mutations, suggesting a convergent evolutionary process.
Researchers have found that hypermucoviscous K pneumoniae strains carry higher rates of virulence genes and are less responsive to conventional drugs. These strains are thicker and stickier than previous strains, making them more challenging to treat with antibiotics.
Research suggests that COVID-19 patients can transmit viruses with multiple genetic sequences simultaneously, which may impact the development of new variants. This complex sequence diversity highlights the need for continued research into the evolution and transmission of SARS-CoV-2.
Researchers have created a new mouse model that mimics brain damage caused by severe RVFV infection, enabling the study of disease mechanisms and high-throughput testing of next-generation drugs. This breakthrough has significant implications for developing therapies and vaccines for this devastating virus.
Scientists have determined the molecular structure of HIV Pol, a protein that plays a key role in the late stages of HIV replication. The discovery reveals a new vulnerability in the virus that could be targeted with drugs, and sheds light on how the protein breaks apart to advance the replication process.
Researchers discuss Hepatitis D's life cycle and interactions with its host, exploring strategies for further research to combat this overlooked virus. HDV coinfects people with hepatitis B, rapidly progressing to liver cirrhosis and cancer if left untreated, with a review published in the Chinese Medical Journal.
A study found that COVID-19 disrupted RSV's seasonal pattern, leading to a 'collapse' of existing strains and emergence of new ones. The pandemic also accelerated the spread and evolution of other viruses like influenza.
A new lab test has been developed by Rutgers scientists to identify COVID-19 variants. The test uses molecular beacon technology and can detect eight different mutations in the spike protein, increasing the transmissibility of the virus and evading immune defenses.
Researchers discover medusavirus undergoes four stages of maturation within host cells, with unique particle structures and DNA-protein exchange mechanisms. The findings provide new insights into giant viruses' biology and behavior.
The SAVE program, a NIH initiative, provides real-time risk assessment of SARS-CoV-2 variants on immune protection. It uses a coordinated approach to identify and curate data about these variants, their impact on immunity, and their effects on vaccine protection.
Researchers have found COVID-19 infection in white-tailed deer in six northeast Ohio locations, suggesting the virus may be spreading among wildlife. The study's findings indicate that infected deer can potentially harbor new strains of SARS-CoV-2, complicating human mitigation and control plans.
Researchers report that combining infection and vaccination produces high-quality antibodies effective against COVID-19 variants. The study found that prior-infected individuals who received a vaccine had potent antibodies against new variants, contrary to previous findings suggesting reduced potency.
Researchers developed a computational method to estimate new infection rates from genomic sequences, revealing decreased case detection in Europe during summer 2020 due to relaxed testing criteria. The study also highlights the effects of non-pharmaceutical interventions on COVID-19 spread.
Researchers created a model to estimate viral population variability using epidemiological data, predicting the emergence of novel variants. The study suggests that lack of vaccination increases mutation frequency and spread.
Immunocompromised individuals are at risk for prolonged viral shedding and the emergence of novel variants of concern. Healthcare providers must develop precise guidelines for monitoring and treating these patients.
A new method developed by Drexel University researchers can rapidly reveal the genetic evolution and spread of COVID-19. By analyzing global genetic data, they identified at least 8 to 14 variants of the virus infecting Americans, some originating from Asia or Europe.
Researchers analyzed 455 SARS-CoV-2 genomes from Washington State and found evidence of a single introduction between January 22 and February 10. The analysis suggests that widespread surveillance is crucial even after the pandemic is brought under control, as community transmission can still occur.
The 2019-nCoV virus has nearly identical genetic sequences among patients, indicating a recent emergence and rapid detection. The virus shares similarities with bat-derived coronaviruses and may use the ACE2 receptor to enter human cells.
Researchers at Ohio State University have made a significant discovery in developing an RSV vaccine, targeting an epigenetic modification that can tame the virus and prompt a robust immune response. The study's findings could lead to a more effective and affordable vaccine that saves tens of thousands of lives annually.
Researchers found that bat influenza viruses acquire specific amino acid mutations in hemagglutinin (HA) and neuraminidase (NA), enabling NA-independent growth. These changes facilitate viral spread without relying on the HA protein.
Scientists have discovered two Zika mutations that help the virus replicate in mosquito hosts but hinder its ability to replicate in mammals. This breakthrough technique allows researchers to fast-track vaccine development, potentially leading to effective treatments for birth defects caused by the virus.
Scientists discover Zika virus has been circulating in Thailand since at least 2002, defying South American pattern of viral strain similarity. The finding highlights the need for effective long-term surveillance systems to monitor the virus's activity.
Researchers found parallel genetic changes in closely related species, making them vulnerable to viral jumps. This raises concerns about emerging infectious diseases like HIV and SARS coronavirus.
A recent study by USAMRIID and collaborators found that the monkeypox virus outbreak in Nigeria likely originated from a local source, with one of the earliest cases dating back to 1971. The findings highlight the importance of local surveillance for early detection of viral spillovers.
Researchers identified a single genetic change, S139N, that enabled the Zika virus to cause microcephaly in mouse models of fetal infection. This mutation made the virus more lethal to human neuron precursor cells and substantially more severe in cases of microcephaly.
A new study found that only 4.5% of hospitalized patients with end-stage liver disease received palliative care consultations. The rate of referrals increased from 0.97% in 2006 to 7.1% in 2012, but still remains low due to socioeconomic and ethnic barriers.
A new study has found that the Zika virus circulated undetected for up to a year in some regions before public health authorities took notice. The research, published in Nature, reconstructed the virus's dispersal by sequencing genetic material from hundreds of patients in ten countries and territories.
Research suggests that both patient genetics and HIV viral genome mutations impact disease progression, with human genetic variation explaining 8.4% of variation in viral load.